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Report for CCDS41886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41886.1 Public Homo sapiens 13 FNDC3A 24 110 108 CCDS HistoryNCBI Gene:22862Re-query CCDS DB by CCDS ID:41886.1Re-query CCDS DB by GeneID:22862See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000492622.6 ENSP00000417257.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000492622.6Link to Ensembl Protein Viewer:ENSP00000417257.1Re-query CCDS DB by Nucleotide ID:ENST00000492622Re-query CCDS DB by Protein ID:ENSP00000417257
Original member Current member EBI ENST00000541916.5 ENSP00000441831.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541916.5Link to Ensembl Protein Viewer:ENSP00000441831.1Re-query CCDS DB by Nucleotide ID:ENST00000541916Re-query CCDS DB by Protein ID:ENSP00000441831
Original member Current member NCBI NM_001079673.2 NP_001073141.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001079673.2Link to Protein Sequence:NP_001073141.1Re-query CCDS DB by Nucleotide ID:NM_001079673Re-query CCDS DB by Protein ID:NP_001073141Link to BLAST:NP_001073141.1
Original member Current member NCBI NM_001278438.2 NP_001265367.1 Accepted alive Link to Nucleotide Sequence:NM_001278438.2Link to Protein Sequence:NP_001265367.1Re-query CCDS DB by Nucleotide ID:NM_001278438Re-query CCDS DB by Protein ID:NP_001265367Link to BLAST:NP_001265367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073141.1 1198 Q9Y2H6-1 1198 100% 0 0
NP_001265367.1 1198 Q9Y2H6-1 1198 100% 0 0

Chromosomal Locations for CCDS 41886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49006191 49006289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49075289 49075364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49114655 49114731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49131137 49131374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49136332 49136601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49138747 49138805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49145778 49145935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49167244 49167303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49168613 49168751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49172043 49172096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49174435 49174559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49175367 49175541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49178568 49178654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49185964 49186102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49187122 49187190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49188515 49188633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49191015 49191120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49191209 49191384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49196877 49196990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49197725 49197874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49197982 49198265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49198362 49198574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49201800 49201966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49203157 49203284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49207081 49207395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3597 nt):
ATGGCAGAACATCCACCACTACTGGATACAACTCAGATCTTAAGTAGTGATATTTCTCTTTTGTCTGCCC
CTATTGTAAGTGCAGATGGAACACAACAGGTTATTCTGGTACAAGTTAACCCAGGAGAAGCATTTACAAT
AAGAAGAGAAGATGGACAGTTTCAGTGCATTACAGGTCCTGCTCAGGTTCCAATGATGTCCCCAAATGGT
TCTGTGCCTCCTATCTATGTGCCTCCTGGATATGCCCCACAGGTTATTGAAGACAATGGTGTTCGAAGAG
TTGTCGTGGTCCCTCAGGCACCAGAGTTTCACCCTGGTAGTCACACAGTTCTCCACCGTTCTCCACATCC
TCCTCTACCTGGTTTCATTCCTGTCCCAACTATGATGCCGCCTCCACCACGTCATATGTACTCACCCGTG
ACTGGAGCTGGAGACATGACAACACAGTATATGCCACAGTATCAGTCTTCACAAGTCTATGGAGATGTAG
ATGCTCACTCTACACATGGAAGGTCCAACTTTAGAGATGAACGATCTAGTAAAACATATGAACGTTTGCA
GAAAAAATTGAAGGATCGCCAAGGAACACAGAAAGATAAAATGAGCAGTCCACCATCATCACCCCAGAAA
TGCCCTTCTCCCATTAATGAACATAATGGACTTATAAAAGGACAAATTGCTGGTGGTATAAACACAGGAT
CAGCAAAAATCAAGTCTGGGAAGGGGAAAGGTGGTACACAAGTTGATACAGAAATTGAAGAAAAAGATGA
AGAAACTAAAGCATTTGAAGCACTTCTTTCCAACATTGTCAAACCAGTGGCCTCCGACATCCAGGCAAGG
ACAGTAGTACTTACCTGGTCACCACCTTCCAGCCTCATTAATGGTGAAACAGATGAAAGTAGTGTACCAG
AGCTCTATGGTTATGAAGTTCTGATCTCAAGTACTGGAAAAGATGGGAAATACAAAAGTGTATATGTAGG
AGAAGAAACAAATATCACTTTAAATGATCTCAAGCCAGCCATGGATTACCATGCAAAAGTCCAGGCAGAA
TATAATTCTATAAAGGGAACTCCTTCAGAGGCTGAAATCTTTACCACCTTGAGCTGTGAACCTGATATAC
CTAATCCACCAAGGATAGCCAATCGGACCAAAAATTCACTCACTTTGCAATGGAAGGCACCTAGTGACAA
TGGTTCTAAAATCCAAAACTTTGTATTAGAATGGGATGAAGGAAAAGGAAATGGAGAATTTTGTCAGTGT
TACATGGGCTCACAGAAACAATTTAAAATTACTAAACTTTCACCAGCAATGGGCTGTAAATTCAGACTAT
CGGCCAGAAATGACTATGGTACAAGTGGTTTTAGTGAAGAAGTCTTATATTACACCTCAGGCTGTGCTCC
TTCTATGCCAGCAAGTCCTGTATTAACCAAGGCTGGAATTACTTGGTTATCCTTACAATGGAGTAAGCCC
TCAGGAACACCATCAGATGAAGGAATTTCTTACATTTTAGAGATGGAGGAAGAAACTTCAGGATATGGTT
TTAAGCCTAAATATGATGGAGAAGATCTTGCTTACACAGTGAAAAATCTCAGACGTAGTACTAAGTATAA
ATTTAAGGTTATTGCTTACAACTCAGAAGGTAAAAGTAATCCAAGTGAAGTAGTAGAATTTACTACTTGC
CCTGATAAACCAGGCATACCTGTAAAGCCTTCAGTGAAAGGAAAGATACATTCACACAGTTTTAAAATAA
CCTGGGATCCACCAAAAGACAATGGCGGAGCAACCATCAATAAATATGTAGTGGAGATGGCAGAAGGTTC
TAACGGAAACAAATGGGAAATGATATACAGTGGTGCTACCAGGGAACATCTTTGTGATCGACTGAATCCA
GGCTGTTTCTATCGTTTACGAGTTTACTGCATCAGTGATGGAGGACAGAGTGCGGTCTCTGAATCTTTAC
TTGTGCAGACTCCAGCTGTGCCTCCTGGCCCATGCCTCCCTCCCAGATTACAGGGTAGACCCAAAGCAAA
AGAAATACAGTTACGATGGGGACCCCCTCTGGTTGATGGTGGATCACCCATTTCCTGTTACAGTGTGGAA
ATGTCTCCTATAGAAAAAGATGAACCTAGAGAAGTTTACCAAGGTTCTGAAGTAGAATGTACAGTGAGCA
GCCTTCTTCCTGGAAAGACATACAGCTTCAGACTACGTGCAGCTAACAAAATGGGGTTTGGACCATTTTC
AGAAAAATGTGATATTACTACAGCCCCTGGGCCACCAGATCAGTGCAAGCCCCCTCAAGTGACATGTAGA
TCTGCAACTTGTGCACAAGTGAATTGGGAGGTTCCTTTGAGTAATGGAACAGATGTCACTGAATATCGAC
TGGAGTGGGGAGGAGTTGAAGGAAGTATGCAGATATGTTACTGTGGGCCTGGTCTCAGTTATGAAATAAA
AGGACTTTCACCAGCAACTACCTATTATTGCAGGGTCCAGGCTCTGAGTGTTGTGGGTGCAGGCCCTTTC
AGTGAAGTAGTAGCCTGTGTGACTCCACCATCAGTTCCTGGCATTGTGACCTGTCTTCAAGAAATAAGCG
ATGATGAGATAGAAAATCCCCATTATTCACCTTCTACATGCCTTGCAATAAGCTGGGAAAAGCCTTGTGA
TCATGGTTCGGAAATCCTTGCCTACAGCATAGACTTTGGAGATAAACAATCCCTAACAGTGGGAAAGGTT
ACAAGCTATATTATCAACAATTTGCAACCAGATACAACATACAGAATACGAATTCAAGCCTTGAATAGCC
TTGGAGCTGGTCCTTTCAGCCATATGATAAAATTAAAAACTAAGCCTCTCCCTCCTGATCCACCTCGTCT
GGAATGTGTTGCCTTTAGCCACCAGAACCTTAAGCTGAAATGGGGAGAAGGAACTCCAAAGACATTGTCA
ACCGATTCTATTCAGTACCACCTTCAGATGGAGGATAAGAATGGACGGTTTGTATCCCTATACAGAGGAC
CATGTCATACATACAAAGTACAAAGACTTAATGAGTCAACATCCTATAAATTCTGTATTCAAGCTTGTAA
TGAAGCTGGGGAAGGTCCCCTCTCCCAAGAATATATTTTCACTACTCCAAAATCTGTCCCAGCTGCCTTG
AAAGCCCCCAAAATAGAGAAAGTAAATGATCACATTTGTGAAATTACATGGGAGTGTTTACAGCCAATGA
AAGGTGATCCAGTTATTTACAGTCTTCAAGTTATGTTGGGAAAAGATTCAGAATTCAAACAGATTTACAA
GGGTCCCGACTCTTCCTTCCGGTATTCCAGCCTTCAGCTGAACTGTGAATATCGCTTCCGTGTATGTGCC
ATTCGCCAGTGCCAAGACTCTCTGGGACACCAGGACCTCGTAGGTCCCTACAGCACCACAGTGCTCTTCA
TCTCTCAGAGGACTGAACCACCAGCCAGCACCAACAGAGACACTGTGGAAAGCACAAGGACCCGACGGGC
ACTGAGTGACGAGCAGTGTGCTGCCGTCATCCTTGTGCTGTTTGCTTTCTTTTCCATTTTGATTGCCTTT
ATCATTCAGTACTTTGTAATCAAGTGA

Translation (1198 aa):
MAEHPPLLDTTQILSSDISLLSAPIVSADGTQQVILVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNG
SVPPIYVPPGYAPQVIEDNGVRRVVVVPQAPEFHPGSHTVLHRSPHPPLPGFIPVPTMMPPPPRHMYSPV
TGAGDMTTQYMPQYQSSQVYGDVDAHSTHGRSNFRDERSSKTYERLQKKLKDRQGTQKDKMSSPPSSPQK
CPSPINEHNGLIKGQIAGGINTGSAKIKSGKGKGGTQVDTEIEEKDEETKAFEALLSNIVKPVASDIQAR
TVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAE
YNSIKGTPSEAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQC
YMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGITWLSLQWSKP
SGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC
PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNP
GCFYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVE
MSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCR
SATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPF
SEVVACVTPPSVPGIVTCLQEISDDEIENPHYSPSTCLAISWEKPCDHGSEILAYSIDFGDKQSLTVGKV
TSYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKTKPLPPDPPRLECVAFSHQNLKLKWGEGTPKTLS
TDSIQYHLQMEDKNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAAL
KAPKIEKVNDHICEITWECLQPMKGDPVIYSLQVMLGKDSEFKQIYKGPDSSFRYSSLQLNCEYRFRVCA
IRQCQDSLGHQDLVGPYSTTVLFISQRTEPPASTNRDTVESTRTRRALSDEQCAAVILVLFAFFSILIAF
IIQYFVIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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