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Report for CCDS2933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2933.1 Public Homo sapiens 3 ST3GAL6 24 110 108 CCDS HistoryNCBI Gene:10402Re-query CCDS DB by CCDS ID:2933.1Re-query CCDS DB by GeneID:10402See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2933.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265261.11 ENSP00000265261.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265261.11Link to Ensembl Protein Viewer:ENSP00000265261.7Re-query CCDS DB by Nucleotide ID:ENST00000265261Re-query CCDS DB by Protein ID:ENSP00000265261
Original member Current member EBI ENST00000394162.5 ENSP00000377717.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394162.5Link to Ensembl Protein Viewer:ENSP00000377717.1Re-query CCDS DB by Nucleotide ID:ENST00000394162Re-query CCDS DB by Protein ID:ENSP00000377717
Original member Current member EBI ENST00000483910.6 ENSP00000417376.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000483910.6Link to Ensembl Protein Viewer:ENSP00000417376.1Re-query CCDS DB by Nucleotide ID:ENST00000483910Re-query CCDS DB by Protein ID:ENSP00000417376
Original member Current member EBI ENST00000613264.5 ENSP00000480884.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613264.5Link to Ensembl Protein Viewer:ENSP00000480884.2Re-query CCDS DB by Nucleotide ID:ENST00000613264Re-query CCDS DB by Protein ID:ENSP00000480884
Original member Current member NCBI NM_001271146.2 NP_001258075.1 Accepted alive Link to Nucleotide Sequence:NM_001271146.2Link to Protein Sequence:NP_001258075.1Re-query CCDS DB by Nucleotide ID:NM_001271146Re-query CCDS DB by Protein ID:NP_001258075Link to BLAST:NP_001258075.1
Original member Current member NCBI NM_001323352.2 NP_001310281.1 Accepted alive Link to Nucleotide Sequence:NM_001323352.2Link to Protein Sequence:NP_001310281.1Re-query CCDS DB by Nucleotide ID:NM_001323352Re-query CCDS DB by Protein ID:NP_001310281Link to BLAST:NP_001310281.1
Original member Current member NCBI NM_001323365.2 NP_001310294.1 Accepted alive Link to Nucleotide Sequence:NM_001323365.2Link to Protein Sequence:NP_001310294.1Re-query CCDS DB by Nucleotide ID:NM_001323365Re-query CCDS DB by Protein ID:NP_001310294Link to BLAST:NP_001310294.1
Original member Current member NCBI NM_001323367.4 NP_001310296.2 Accepted alive Link to Nucleotide Sequence:NM_001323367.4Link to Protein Sequence:NP_001310296.2Re-query CCDS DB by Nucleotide ID:NM_001323367Re-query CCDS DB by Protein ID:NP_001310296Link to BLAST:NP_001310296.2
Original member Current member NCBI NM_001323368.2 NP_001310297.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001323368.2Link to Protein Sequence:NP_001310297.1Re-query CCDS DB by Nucleotide ID:NM_001323368Re-query CCDS DB by Protein ID:NP_001310297Link to BLAST:NP_001310297.1
Original member Current member NCBI NM_006100.4 NP_006091.1 Accepted alive Link to Nucleotide Sequence:NM_006100.4Link to Protein Sequence:NP_006091.1Re-query CCDS DB by Nucleotide ID:NM_006100Re-query CCDS DB by Protein ID:NP_006091Link to BLAST:NP_006091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258075.1 331 Q9Y274-1 331 100% 0 0
NP_001310281.1 331 Q9Y274-1 331 100% 0 0
NP_001310294.1 331 Q9Y274-1 331 100% 0 0
NP_001310296.2 331 Q9Y274-1 331 100% 0 0
NP_001310297.1 331 Q9Y274-1 331 100% 0 0
NP_006091.1 331 Q9Y274-1 331 100% 0 0

Chromosomal Locations for CCDS 2933.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98768441 98768529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98770879 98770956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98772813 98772916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98773920 98773983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98784945 98785040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98788036 98788222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98788326 98788463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98791841 98791993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98793675 98793761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGAGAGGGTATCTTGTGGCCATATTCCTGAGTGCTGTCTTCCTCTATTATGTACTGCATTGCATATTAT
GGGGAACGAATGTCTATTGGGTGGCACCTGTGGAAATGAAACGGAGAAATAAGATCCAGCCTTGTTTATC
AAAGCCAGCTTTTGCCTCTCTGCTGAGGTTTCATCAGTTTCACCCTTTTCTGTGTGCGGCTGATTTTAGA
AAGATTGCTTCCTTGTATGGTAGCGATAAGTTTGATTTGCCCTATGGGATGAGAACATCAGCGGAATATT
TTCGACTTGCTCTTTCAAAACTGCAGAGTTGTGATCTCTTTGATGAGTTTGACAACATACCCTGTAAAAA
GTGTGTGGTGGTTGGTAATGGAGGAGTTTTGAAGAATAAGACATTAGGAGAAAAAATCGACTCCTATGAT
GTAATAATAAGAATGAATAATGGTCCTGTTTTAGGACATGAAGAAGAAGTTGGGAGAAGGACAACCTTCC
GACTTTTTTATCCAGAATCTGTTTTTTCAGATCCTATTCACAATGACCCTAATACGACAGTGATTCTCAC
TGCTTTTAAGCCACATGATTTAAGGTGGCTGTTGGAATTGTTGATGGGTGACAAAATAAACACTAATGGT
TTTTGGAAGAAACCAGCCTTAAACCTGATTTATAAACCTTATCAAATCCGAATATTAGATCCTTTCATTA
TCAGAACAGCAGCTTATGAACTGCTTCATTTTCCAAAAGTGTTTCCCAAAAATCAGAAACCTAAACACCC
AACAACAGGAATTATTGCCATCACATTGGCGTTTTACATATGTCACGAAGTTCACCTAGCTGGTTTTAAA
TACAACTTTTCTGACCTCAAGAGTCCTTTGCACTACTATGGGAATGCCACCATGTCTTTGATGAATAAGA
ACGCGTATCACAATGTGACTGCAGAGCAGCTCTTTTTGAAGGACATTATAGAAAAAAACCTCGTAATCAA
CTTGACTCAAGATTGA

Translation (331 aa):
MRGYLVAIFLSAVFLYYVLHCILWGTNVYWVAPVEMKRRNKIQPCLSKPAFASLLRFHQFHPFLCAADFR
KIASLYGSDKFDLPYGMRTSAEYFRLALSKLQSCDLFDEFDNIPCKKCVVVGNGGVLKNKTLGEKIDSYD
VIIRMNNGPVLGHEEEVGRRTTFRLFYPESVFSDPIHNDPNTTVILTAFKPHDLRWLLELLMGDKINTNG
FWKKPALNLIYKPYQIRILDPFIIRTAAYELLHFPKVFPKNQKPKHPTTGIIAITLAFYICHEVHLAGFK
YNFSDLKSPLHYYGNATMSLMNKNAYHNVTAEQLFLKDIIEKNLVINLTQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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