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Report for CCDS1173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1173.1 Public Homo sapiens 1 CD1D 24 110 108 CCDS HistoryNCBI Gene:912Re-query CCDS DB by CCDS ID:1173.1Re-query CCDS DB by GeneID:912See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368171.5 ENSP00000357153.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368171.5Link to Ensembl Protein Viewer:ENSP00000357153.3Re-query CCDS DB by Nucleotide ID:ENST00000368171Re-query CCDS DB by Protein ID:ENSP00000357153
Original member Current member EBI ENST00000674085.2 ENSP00000501100.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674085.2Link to Ensembl Protein Viewer:ENSP00000501100.1Re-query CCDS DB by Nucleotide ID:ENST00000674085Re-query CCDS DB by Protein ID:ENSP00000501100
Original member Current member EBI ENST00000673723.4 ENSP00000501245.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673723.4Link to Ensembl Protein Viewer:ENSP00000501245.3Re-query CCDS DB by Nucleotide ID:ENST00000673723Re-query CCDS DB by Protein ID:ENSP00000501245
Original member Current member NCBI NM_001371762.2 NP_001358691.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371762.2Link to Protein Sequence:NP_001358691.1Re-query CCDS DB by Nucleotide ID:NM_001371762Re-query CCDS DB by Protein ID:NP_001358691Link to BLAST:NP_001358691.1
Original member Current member NCBI NM_001371763.1 NP_001358692.1 Accepted alive Link to Nucleotide Sequence:NM_001371763.1Link to Protein Sequence:NP_001358692.1Re-query CCDS DB by Nucleotide ID:NM_001371763Re-query CCDS DB by Protein ID:NP_001358692Link to BLAST:NP_001358692.1
Original member Current member NCBI NM_001766.4 NP_001757.1 Accepted alive Link to Nucleotide Sequence:NM_001766.4Link to Protein Sequence:NP_001757.1Re-query CCDS DB by Nucleotide ID:NM_001766Re-query CCDS DB by Protein ID:NP_001757Link to BLAST:NP_001757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358691.1 335 P15813 335 100% 0 0
NP_001358692.1 335 P15813 335 100% 0 0
NP_001757.1 335 P15813 335 100% 0 0

Chromosomal Locations for CCDS 1173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 158181102 158181162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158181455 158181721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158182032 158182310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158182878 158183156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158183936 158184035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158184129 158184150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGGGTGCCTGCTGTTTCTGCTGCTCTGGGCGCTCCTCCAGGCTTGGGGAAGCGCTGAAGTCCCGCAAA
GGCTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAATAGCAGCTGGACGCGCACCGACGGCTT
GGCGTGGCTGGGGGAGCTGCAGACGCACAGCTGGAGCAACGACTCGGACACCGTCCGCTCTCTGAAGCCT
TGGTCCCAGGGCACGTTCAGCGACCAGCAGTGGGAGACGCTGCAGCATATATTTCGGGTTTATCGAAGCA
GCTTCACCAGGGACGTGAAGGAATTCGCCAAAATGCTACGCTTATCCTATCCCTTGGAGCTCCAGGTGTC
CGCTGGCTGTGAGGTGCACCCTGGGAACGCCTCAAATAACTTCTTCCATGTAGCATTTCAAGGAAAAGAT
ATCCTGAGTTTCCAAGGAACTTCTTGGGAGCCAACCCAAGAGGCCCCACTTTGGGTAAACTTGGCCATTC
AAGTGCTCAACCAGGACAAGTGGACGAGGGAAACAGTGCAGTGGCTCCTTAATGGCACCTGCCCCCAATT
TGTCAGTGGCCTCCTTGAGTCAGGGAAGTCGGAACTGAAGAAGCAAGTGAAGCCCAAGGCCTGGCTGTCC
CGTGGCCCCAGTCCTGGCCCTGGCCGTCTGCTGCTGGTGTGCCATGTCTCAGGATTCTACCCAAAGCCTG
TATGGGTGAAGTGGATGCGGGGTGAGCAGGAGCAGCAGGGCACTCAGCCAGGGGACATCCTGCCCAATGC
TGACGAGACATGGTATCTCCGAGCAACCCTGGATGTGGTGGCTGGGGAGGCAGCTGGCCTGTCCTGTCGG
GTGAAGCACAGCAGTCTAGAGGGCCAGGACATCGTCCTCTACTGGGGTGGGAGCTACACCTCCATGGGCT
TGATTGCCTTGGCAGTCCTGGCGTGCTTGCTGTTCCTCCTCATTGTGGGCTTTACCTCCCGGTTTAAGAG
GCAAACTTCCTATCAGGGCGTCCTGTGA

Translation (335 aa):
MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKP
WSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNASNNFFHVAFQGKD
ILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLLESGKSELKKQVKPKAWLS
RGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCR
VKHSSLEGQDIVLYWGGSYTSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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