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Report for CCDS47930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47930.1 Public Homo sapiens 8 EEF1D 24 110 108 CCDS HistoryNCBI Gene:1936Re-query CCDS DB by CCDS ID:47930.1Re-query CCDS DB by GeneID:1936See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000534377.6 ENSP00000431460.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534377.6Link to Ensembl Protein Viewer:ENSP00000431460.2Re-query CCDS DB by Nucleotide ID:ENST00000534377Re-query CCDS DB by Protein ID:ENSP00000431460
Original member Current member EBI ENST00000528610.5 ENSP00000431763.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528610.5Link to Ensembl Protein Viewer:ENSP00000431763.1Re-query CCDS DB by Nucleotide ID:ENST00000528610Re-query CCDS DB by Protein ID:ENSP00000431763
Original member Current member EBI ENST00000524624.5 ENSP00000435697.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524624.5Link to Ensembl Protein Viewer:ENSP00000435697.1Re-query CCDS DB by Nucleotide ID:ENST00000524624Re-query CCDS DB by Protein ID:ENSP00000435697
Original member Current member NCBI NM_001130056.5 NP_001123528.1 Accepted alive Link to Nucleotide Sequence:NM_001130056.5Link to Protein Sequence:NP_001123528.1Re-query CCDS DB by Nucleotide ID:NM_001130056Re-query CCDS DB by Protein ID:NP_001123528Link to BLAST:NP_001123528.1
Original member Current member NCBI NM_001317743.4 NP_001304672.1 Accepted alive Link to Nucleotide Sequence:NM_001317743.4Link to Protein Sequence:NP_001304672.1Re-query CCDS DB by Nucleotide ID:NM_001317743Re-query CCDS DB by Protein ID:NP_001304672Link to BLAST:NP_001304672.1
Original member Current member NCBI NM_001330646.3 NP_001317575.1 Accepted alive Link to Nucleotide Sequence:NM_001330646.3Link to Protein Sequence:NP_001317575.1Re-query CCDS DB by Nucleotide ID:NM_001330646Re-query CCDS DB by Protein ID:NP_001317575Link to BLAST:NP_001317575.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123528.1 257 P29692-3 257 100% 0 0
NP_001304672.1 257 P29692-3 257 100% 0 0
NP_001317575.1 257 P29692-3 257 100% 0 0

Chromosomal Locations for CCDS 47930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143579792 143579830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143580012 143580206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143580506 143580727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143581054 143581154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143581229 143581328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143586729 143586845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCTACAAACTTCCTAGCACATGAGAAGATCTGGTTCGACAAGTTCAAATATGACGACGCAGAAAGGA
GATTCTACGAGCAGATGAACGGGCCTGTGGCAGGTGCCTCCCGCCAGAGCTCAGGCCCCGGGGCCTCCAG
CGGCACCAGCGGAGACCACGGTGAGCTCGTCGTCCGGATTGCCAGTCTGGAAGTGGAGAACCAGAGTCTG
CGTGGCGTGGTACAGGAGCTGCAGCAGGCCATCTCCAAGCTGGAGGCCCGGCTGAACGTGCTGGAGAAGA
GCTCGCCTGGCCACCGGGCCACGGCCCCACAGACCCAGCACGTATCTCCCATGCGCCAAGTGGAGCCCCC
AGCCAAGAAGCCAGCCACACCAGCAGAGGATGACGAGGATGATGACATTGACCTGTTTGGCAGTGACAAT
GAGGAGGAGGACAAGGAGGCGGCACAGCTGCGGGAGGAGCGGCTACGGCAGTACGCGGAGAAGAAGGCCA
AGAAGCCTGCACTGGTGGCCAAGTCCTCCATCCTGCTGGATGTCAAGCCTTGGGATGATGAGACGGACAT
GGCCCAGCTGGAGGCCTGTGTGCGCTCTATCCAGCTGGACGGGCTGGTCTGGGGGGCTTCCAAGCTGGTG
CCCGTGGGCTACGGTATCCGGAAGCTACAGATTCAGTGTGTGGTGGAGGACGACAAGGTGGGGACAGACT
TGCTGGAGGAGGAGATCACCAAGTTTGAGGAGCACGTGCAGAGTGTCGATATCGCAGCTTTCAACAAGAT
CTGA

Translation (257 aa):
MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQSSGPGASSGTSGDHGELVVRIASLEVENQSL
RGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDN
EEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLV
PVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQSVDIAAFNKI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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