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Report for CCDS83390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83390.1 Public Homo sapiens 9 SLC44A1 24 110 108 CCDS HistoryNCBI Gene:23446Re-query CCDS DB by CCDS ID:83390.1Re-query CCDS DB by GeneID:23446See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83390.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374724.1 ENSP00000363856.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374724.1Link to Ensembl Protein Viewer:ENSP00000363856.1Re-query CCDS DB by Nucleotide ID:ENST00000374724Re-query CCDS DB by Protein ID:ENSP00000363856
Original member Current member NCBI NM_001330731.2 NP_001317660.1 Accepted alive Link to Nucleotide Sequence:NM_001330731.2Link to Protein Sequence:NP_001317660.1Re-query CCDS DB by Nucleotide ID:NM_001330731Re-query CCDS DB by Protein ID:NP_001317660Link to BLAST:NP_001317660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317660.1 654 Q8WWI5-2 654 100% 0 0

Chromosomal Locations for CCDS 83390.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 105244869 105244904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105299220 105299309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105309724 105309866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105335563 105335699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105348358 105348451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105356212 105356381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105358344 105358433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105361191 105361330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105362821 105363007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105364555 105364720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105365483 105365639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105366346 105366429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105374598 105374735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105383123 105383359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105385422 105385502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105438281 105438295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGGGCTGCTGCAGCTCCGCCTCCTCCGCCGCGCAGAGCTCCAAACGAGAATGGAAGCCGCTGGAGGACC
GTAGCTGCACAGACATACCATGGCTGCTGCTCTTCATCCTCTTCTGCATTGGGATGGGATTTATTTGTGG
CTTTTCAATAGCAACAGGTGCAGCAGCAAGACTAGTGTCAGGATACGACAGCTATGGAAATATCTGTGGG
CAGAAAAATACAAAGTTGGAAGCAATACCAAACAGTGGCATGGACCACACCCAGCGGAAGTATGTATTCT
TTTTGGATCCATGCAACCTGGACTTGATAAACCGGAAGATTAAGTCTGTAGCACTGTGTGTAGCAGCGTG
TCCAAGGCAAGAACTGAAAACTCTGAGTGATGTTCAGAAGTTTGCAGAGATAAATGGTTCAGCCCTATGT
AGCTACAACCTAAAGCCTTCTGAATACACTACATCTCCAAAATCTTCTGTTCTCTGCCCCAAACTACCAG
TTCCAGCGAGTGCACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCCTGCTATGCCAAGTT
TGCAGAGGCCCTGATCACCTTTGTCAGTGACAATAGTGTCTTACACAGGCTGATTAGTGGAGTAATGACC
AGCAAAGAAATTATATTGGGACTTTGCTTGTTATCACTAGTTCTATCCATGATTTTGATGGTGATAATCA
GGTATATATCAAGAGTACTTGTGTGGATCTTAACGATTCTGGTCATACTCGGTTCACTTGGAGGCACAGG
TGTACTATGGTGGCTGTATGCAAAGCAAAGAAGGTCTCCCAAAGAAACTGTTACTCCTGAGCAGCTTCAG
ATAGCTGAAGACAATCTTCGGGCCCTCCTCATTTATGCCATTTCAGCTACAGTGTTCACAGTGATCTTAT
TCCTGATAATGTTGGTTATGCGCAAACGTGTTGCTCTTACCATCGCCTTGTTCCACGTAGCTGGCAAGGT
CTTCATTCACTTGCCACTGCTAGTCTTCCAACCCTTCTGGACTTTCTTTGCTCTTGTCTTGTTTTGGGTG
TACTGGATCATGACACTTCTTTTTCTTGGCACTACCGGCAGTCCTGTTCAGAATGAGCAAGGCTTTGTGG
AGTTCAAAATTTCTGGGCCTCTGCAGTACATGTGGTGGTACCATGTGGTGGGCCTGATTTGGATCAGTGA
ATTTATTCTAGCATGTCAGCAGATGACAGTGGCAGGAGCTGTGGTAACATACTATTTTACTAGGGATAAA
AGGAATTTGCCATTTACACCTATTTTGGCATCAGTAAATCGCCTTATTCGTTACCACCTAGGTACGGTGG
CAAAAGGATCTTTCATTATCACATTAGTCAAAATTCCGCGAATGATCCTTATGTATATTCACAGTCAGCT
CAAAGGAAAGGAAAATGCTTGTGCACGATGTGTGCTGAAATCTTGCATTTGTTGCCTTTGGTGTCTTGAA
AAGTGCCTAAATTATTTAAATCAGAATGCATACACAGCCACAGCTATCAACAGCACCAACTTCTGCACCT
CAGCAAAGGATGCCTTTGTCATTCTGGTGGAGAATGCTTTGCGAGTGGCTACCATCAACACAGTAGGAGA
TTTTATGTTATTCCTTGGCAAGGTGCTGATAGTCTGCAGCACAGGTTTAGCTGGGATTATGCTGCTCAAC
TACCAGCAGGACTACACAGTATGGGTGCTGCCTCTGATCATCGTCTGCCTCTTTGCTTTCCTAGTCGCTC
ATTGCTTCCTGTCTATTTATGAAATGGTAGTGGATGTATTATTCTTGTGTTTTGCCATTGATACAAAATA
CAATGATGGGAGCCCTGGCAGAGAATTCTATATGGATAAAGTGCTGATGGAGTTTGTGGAAAACAGTAGG
AAAGCAATGAAAGAAGCTGGTAAGGGAGGCGTCGCTGATTCCAGAGAGCTAAAGCCGATGCTGAAGAAAA
GGTGA

Translation (654 aa):
MGCCSSASSAAQSSKREWKPLEDRSCTDIPWLLLFILFCIGMGFICGFSIATGAAARLVSGYDSYGNICG
QKNTKLEAIPNSGMDHTQRKYVFFLDPCNLDLINRKIKSVALCVAACPRQELKTLSDVQKFAEINGSALC
SYNLKPSEYTTSPKSSVLCPKLPVPASAPIPFFHRCAPVNISCYAKFAEALITFVSDNSVLHRLISGVMT
SKEIILGLCLLSLVLSMILMVIIRYISRVLVWILTILVILGSLGGTGVLWWLYAKQRRSPKETVTPEQLQ
IAEDNLRALLIYAISATVFTVILFLIMLVMRKRVALTIALFHVAGKVFIHLPLLVFQPFWTFFALVLFWV
YWIMTLLFLGTTGSPVQNEQGFVEFKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDK
RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCVLKSCICCLWCLE
KCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVATINTVGDFMLFLGKVLIVCSTGLAGIMLLN
YQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVDVLFLCFAIDTKYNDGSPGREFYMDKVLMEFVENSR
KAMKEAGKGGVADSRELKPMLKKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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