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Report for CCDS82867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82867.1 Public Homo sapiens 3 GFM1 24 110 108 CCDS HistoryNCBI Gene:85476Re-query CCDS DB by CCDS ID:82867.1Re-query CCDS DB by GeneID:85476See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82867.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000478576.5 ENSP00000418755.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478576.5Link to Ensembl Protein Viewer:ENSP00000418755.1Re-query CCDS DB by Nucleotide ID:ENST00000478576Re-query CCDS DB by Protein ID:ENSP00000418755
Original member Current member NCBI NM_001308166.2 NP_001295095.1 Accepted alive Link to Nucleotide Sequence:NM_001308166.2Link to Protein Sequence:NP_001295095.1Re-query CCDS DB by Nucleotide ID:NM_001308166Re-query CCDS DB by Protein ID:NP_001295095Link to BLAST:NP_001295095.1

Chromosomal Locations for CCDS 82867.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158644635 158644715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158645629 158645781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158646165 158646297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158646743 158646947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158649041 158649157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158652096 158652246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158653310 158653467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158654547 158654631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158658922 158659059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158660874 158660975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158662628 158662684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158665337 158665474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158666304 158666386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158681995 158682169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGAGACTCCTGGGAGCTGCAGCCGTCGCGGCTCTGGGGCGCGGAAGGGCCCCCGCCTCCCTAGGCTGGC
AGAGGAAGCAGGTTAATTGGAAGGCCTGCCGATGGTCTTCATCAGGGGTGATTCCTAATGAAAAAATACG
AAATATTGGAATCTCAGCTCACATTGATTCTGGGAAAACTACATTAACAGAACGAGTCCTTTACTACACT
GGCAGAATTGCAAAGATGCATGAGGTGAAAGGTAAAGATGGAGTTGGTGCTGTCATGGATTCCATGGAAC
TAGAGAGACAAAGAGGAATCACTATTCAGTCAGCAGCCACTTACACCATGTGGAAAGATGTCAATATTAA
CATTATAGATACTCCTGGGCATGTGGACTTCACAATAGAAGTGGAAAGGGCCCTGAGAGTGTTGGATGGT
GCAGTCCTTGTTCTCTGTGCTGTTGGAGGGGTACAGTGCCAGACCATGACTGTCAATCGTCAGATGAAGC
GCTACAACGTTCCGTTTCTAACTTTTATTAACAAATTGGACCGAATGGGCTCCAACCCAGCCAGGGCCCT
GCAGCAAATGAGGTCTAAACTAAATCATAATGCAGCGTTTATGCAGATACCCATGGGTTTGGAGGGTAAT
TTTAAAGGTATTGTAGATCTTATTGAGGAACGAGCCATCTATTTTGATGGAGACTTTGGTCAGATTGTTC
GATATGGTGAGATTCCAGCTGAATTAAGGGCGGCGGCCACTGACCACCGGCAGGAGCTAATTGAATGTGT
TGCCAATTCAGATGAACAGCTTGGTGAGATGTTTCTGGAAGAAAAAATCCCCTCGATTTCTGATTTAAAG
CTAGCAATTCGAAGAGCTACTCTGAAAAGATCATTTACTCCTGTATTTTTGGGAAGCGCCTTGAAGAACA
AAGGAGTTCAGCCTCTTTTAGATGCTGTTTTAGAATACCTCCCAAATCCATCTGAAGTCCAGAACTATGC
TATTCTCAATAAAGAGGATGACTCAAAAGAGAAAACCAAAATCCTAATGAACTCCAGTAGAGACAATTCC
CACCCATTTGTAGGCCTGGCTTTTAAACTGGAGGTAGGTCGATTTGGACAATTAACTTATGTTCGCAGTT
ATCAGGGAGAGCTAAAGAAGGGTGACACCATCTATAACACAAGGACAAGAAAGAAAGTACGGTTGCAACG
GCTGGCTCGCATGCATGCCGACATGATGGAGGATGTTGAGGAAGTATATGCCGGAGACATCTGTGCATTG
TTTGGCATTGACTGTGCTAGTGGAGACACATTCACAGACAAAGCCAACAGCGGCCTTTCTATGGAGTCAA
TTCATGTTCCTGATCCTGTCATTTCAATAGCAATGAAGCCTTCTAACAAGAACGATCTGGAAAAATTTTC
AAAAGGTATTGGCAGGTTTACAAGAGAAGATCCCACATTTAAAGTATACTTTGACACTGAGAACAAAGAG
ACAGTTATATCTGGAATGGGAGAATTACACCTGGAAATCTATGCTCAGAGGCTGGAAAGAGAGTATGGCT
GTCCTTGTATCACAGGAAAGCCAAAAGTTGCCTTTCGAGAGACCATTACTGCCCCTGTCCCGTTTGACTT
TACACATAAAAAACAATCAGGTGGTGCAGGCCAGTATGGAAAAGTAATAGGTGTCCTGGAGCCTCTGGAC
CCAGAGGACTACACTAAATTGGAATTTTCAGATGAAACATTCGGATCAAATATTCCAAAGCAGTTTGTGC
CTGCTGTAGAAAAGGTAAATTTTTAA

Translation (591 aa):
MRLLGAAAVAALGRGRAPASLGWQRKQVNWKACRWSSSGVIPNEKIRNIGISAHIDSGKTTLTERVLYYT
GRIAKMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWKDVNINIIDTPGHVDFTIEVERALRVLDG
AVLVLCAVGGVQCQTMTVNRQMKRYNVPFLTFINKLDRMGSNPARALQQMRSKLNHNAAFMQIPMGLEGN
FKGIVDLIEERAIYFDGDFGQIVRYGEIPAELRAAATDHRQELIECVANSDEQLGEMFLEEKIPSISDLK
LAIRRATLKRSFTPVFLGSALKNKGVQPLLDAVLEYLPNPSEVQNYAILNKEDDSKEKTKILMNSSRDNS
HPFVGLAFKLEVGRFGQLTYVRSYQGELKKGDTIYNTRTRKKVRLQRLARMHADMMEDVEEVYAGDICAL
FGIDCASGDTFTDKANSGLSMESIHVPDPVISIAMKPSNKNDLEKFSKGIGRFTREDPTFKVYFDTENKE
TVISGMGELHLEIYAQRLEREYGCPCITGKPKVAFRETITAPVPFDFTHKKQSGGAGQYGKVIGVLEPLD
PEDYTKLEFSDETFGSNIPKQFVPAVEKVNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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