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Report for CCDS41278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41278.1 Public Homo sapiens 1 NBL1 24 110 108 CCDS HistoryNCBI Gene:4681Re-query CCDS DB by CCDS ID:41278.1Re-query CCDS DB by GeneID:4681See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41278.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289749.6 ENSP00000289749.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289749.6Link to Ensembl Protein Viewer:ENSP00000289749.2Re-query CCDS DB by Nucleotide ID:ENST00000289749Re-query CCDS DB by Protein ID:ENSP00000289749
Original member Current member NCBI NM_182744.4 NP_877421.2 Accepted alive Link to Nucleotide Sequence:NM_182744.4Link to Protein Sequence:NP_877421.2Re-query CCDS DB by Nucleotide ID:NM_182744Re-query CCDS DB by Protein ID:NP_877421Link to BLAST:NP_877421.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877421.2 216 P41271-2 216 100% 0 0

Chromosomal Locations for CCDS 41278.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19643312 19643397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19655012 19655200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19655324 19655435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19656866 19657129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGCCCGGCAACCTCATGAGTCAGACAAGCAGGGCTGTGTCTATCTGGAAGTTTCCAGCCAAGCTAGGTA
AAACACATGGACACAGGGCTCTGGAGGCCACGGGCATGATGCTTCGGGTCCTGGTGGGGGCTGTCCTCCC
TGCCATGCTACTGGCTGCCCCACCACCCATCAACAAGCTGGCACTGTTCCCAGATAAGAGTGCCTGGTGC
GAAGCCAAGAACATCACCCAGATCGTGGGCCACAGCGGCTGTGAGGCCAAGTCCATCCAGAACAGGGCGT
GCCTAGGACAGTGCTTCAGCTACAGCGTCCCCAACACCTTCCCACAGTCCACAGAGTCCCTGGTTCACTG
TGACTCCTGCATGCCAGCCCAGTCCATGTGGGAGATTGTGACGCTGGAGTGCCCGGGCCACGAGGAGGTG
CCCAGGGTGGACAAGCTGGTGGAGAAGATCCTGCACTGTAGCTGCCAGGCCTGCGGCAAGGAGCCTAGTC
ACGAGGGGCTGAGCGTCTATGTGCAGGGCGAGGACGGGCCGGGATCCCAGCCCGGCACCCACCCTCACCC
CCATCCCCACCCCCATCCTGGCGGGCAGACCCCTGAGCCCGAGGACCCCCCTGGGGCCCCCCACACAGAG
GAAGAGGGGGCTGAGGACTGA

Translation (216 aa):
MPGNLMSQTSRAVSIWKFPAKLGKTHGHRALEATGMMLRVLVGAVLPAMLLAAPPPINKLALFPDKSAWC
EAKNITQIVGHSGCEAKSIQNRACLGQCFSYSVPNTFPQSTESLVHCDSCMPAQSMWEIVTLECPGHEEV
PRVDKLVEKILHCSCQACGKEPSHEGLSVYVQGEDGPGSQPGTHPHPHPHPHPGGQTPEPEDPPGAPHTE
EEGAED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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