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Report for CCDS47337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47337.1 Public Homo sapiens 5 FOXI1 24 110 108 CCDS HistoryNCBI Gene:2299Re-query CCDS DB by CCDS ID:47337.1Re-query CCDS DB by GeneID:2299See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47337.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449804.4 ENSP00000415483.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449804.4Link to Ensembl Protein Viewer:ENSP00000415483.2Re-query CCDS DB by Nucleotide ID:ENST00000449804Re-query CCDS DB by Protein ID:ENSP00000415483
Original member Current member NCBI NM_144769.4 NP_658982.1 Accepted alive Link to Nucleotide Sequence:NM_144769.4Link to Protein Sequence:NP_658982.1Re-query CCDS DB by Nucleotide ID:NM_144769Re-query CCDS DB by Protein ID:NP_658982Link to BLAST:NP_658982.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_658982.1 283 Q12951-2 283 100% 0 0

Chromosomal Locations for CCDS 47337.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 170105958 170106531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 170108334 170108611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGAGCTCCTTCGACCTGCCGGCGCCCTCCCCACCTCGCTGCAGCCCCCAGTTCCCCAGCATCGGCCAGG
AGCCCCCCGAGATGAACCTCTACTATGAGAACTTCTTCCACCCACAGGGCGTGCCCAGCCCTCAGCGGCC
CTCCTTCGAGGGGGGCGGCGAGTATGGGGCCACCCCCAACCCCTACCTCTGGTTCAACGGGCCCACCATG
ACCCCGCCACCCTACCTGCCCGGCCCCAACGCCAGCCCCTTCCTGCCCCAGGCCTATGGAGTGCAGAGGC
CGCTGCTGCCCAGCGTGTCGGGGCTTGGGGGGAGCGACCTGGGCTGGCTGCCCATCCCCTCGCAGGAGGA
GCTGATGAAGCTGGTGCGGCCACCCTATTCCTACTCGGCTCTCATCGCCATGGCCATCCACGGGGCACCC
GACAAGCGCCTCACTCTCAGCCAGATCTACCAGTACGTGGCCGACAACTTCCCCTTCTACAACAAGAGCA
AGGCCGGCTGGCAGAACTCCATCCGCCACAACCTGTCGCTCAACGACTGCTTCAAGAAGGTGCCCCGCGA
CGAGGACGACCCGGCCTATGTGAGCGGGGGGAGCCCCACGAGCCACCCCTTGGTCACACCAGGACTGAGC
CCTGAGCCCAGTGACAAGACGGGGCAGAACTCACTGACCTTCAACTCCTTCTCCCCGCTCACCAACCTCA
GCAACCACAGCGGTGGGGGTGACTGGGCGAACCCCATGCCCACCAACATGCTCAGCTATGGAGGATCTGT
GCTCAGCCAATTCAGCCCTCACTTCTACAACAGTGTCAACACCAGTGGTGTCCTCTACCCCAGGGAGGGC
ACCGAGGTCTAG

Translation (283 aa):
MSSFDLPAPSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPNPYLWFNGPTM
TPPPYLPGPNASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGAP
DKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPAYVSGGSPTSHPLVTPGLS
PEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHFYNSVNTSGVLYPREG
TEV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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