NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3674.1 Public Homo sapiens 4 AIMP1 24 110 108 CCDS HistoryNCBI Gene:9255Re-query CCDS DB by CCDS ID:3674.1Re-query CCDS DB by GeneID:9255See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 3674.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358008.7 ENSP00000350699.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358008.7Link to Ensembl Protein Viewer:ENSP00000350699.3Re-query CCDS DB by Nucleotide ID:ENST00000358008Re-query CCDS DB by Protein ID:ENSP00000350699
Original member Current member EBI ENST00000671868.1 ENSP00000499850.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671868.1Link to Ensembl Protein Viewer:ENSP00000499850.1Re-query CCDS DB by Nucleotide ID:ENST00000671868Re-query CCDS DB by Protein ID:ENSP00000499850
Original member Current member EBI ENST00000672337.1 ENSP00000499921.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672337.1Link to Ensembl Protein Viewer:ENSP00000499921.1Re-query CCDS DB by Nucleotide ID:ENST00000672337Re-query CCDS DB by Protein ID:ENSP00000499921
Original member Current member EBI ENST00000671960.1 ENSP00000500025.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671960.1Link to Ensembl Protein Viewer:ENSP00000500025.1Re-query CCDS DB by Nucleotide ID:ENST00000671960Re-query CCDS DB by Protein ID:ENSP00000500025
Original member Current member EBI ENST00000672328.1 ENSP00000500159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672328.1Link to Ensembl Protein Viewer:ENSP00000500159.1Re-query CCDS DB by Nucleotide ID:ENST00000672328Re-query CCDS DB by Protein ID:ENSP00000500159
Original member Current member EBI ENST00000672911.1 ENSP00000500170.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672911.1Link to Ensembl Protein Viewer:ENSP00000500170.1Re-query CCDS DB by Nucleotide ID:ENST00000672911Re-query CCDS DB by Protein ID:ENSP00000500170
Original member Current member EBI ENST00000672341.1 ENSP00000500620.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000672341.1Link to Ensembl Protein Viewer:ENSP00000500620.1Re-query CCDS DB by Nucleotide ID:ENST00000672341Re-query CCDS DB by Protein ID:ENSP00000500620
Original member Current member EBI ENST00000672285.1 ENSP00000500668.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672285.1Link to Ensembl Protein Viewer:ENSP00000500668.1Re-query CCDS DB by Nucleotide ID:ENST00000672285Re-query CCDS DB by Protein ID:ENSP00000500668
Original member Current member EBI ENST00000673018.1 ENSP00000500732.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673018.1Link to Ensembl Protein Viewer:ENSP00000500732.1Re-query CCDS DB by Nucleotide ID:ENST00000673018Re-query CCDS DB by Protein ID:ENSP00000500732
Original member Current member EBI ENST00000673123.1 ENSP00000500794.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673123.1Link to Ensembl Protein Viewer:ENSP00000500794.1Re-query CCDS DB by Nucleotide ID:ENST00000673123Re-query CCDS DB by Protein ID:ENSP00000500794
Original member Current member NCBI NM_001142415.2 NP_001135887.1 Accepted alive Link to Nucleotide Sequence:NM_001142415.2Link to Protein Sequence:NP_001135887.1Re-query CCDS DB by Nucleotide ID:NM_001142415Re-query CCDS DB by Protein ID:NP_001135887Link to BLAST:NP_001135887.1
Original member Current member NCBI NM_001142416.2 NP_001135888.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142416.2Link to Protein Sequence:NP_001135888.2Re-query CCDS DB by Nucleotide ID:NM_001142416Re-query CCDS DB by Protein ID:NP_001135888Link to BLAST:NP_001135888.2
Original member Current member NCBI NM_004757.4 NP_004748.2 Accepted alive Link to Nucleotide Sequence:NM_004757.4Link to Protein Sequence:NP_004748.2Re-query CCDS DB by Nucleotide ID:NM_004757Re-query CCDS DB by Protein ID:NP_004748Link to BLAST:NP_004748.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135887.1 312 Q12904-1 312 100% 0 0
NP_001135888.2 312 Q12904-1 312 100% 0 0
NP_004748.2 312 Q12904-1 312 100% 0 0

Chromosomal Locations for CCDS 3674.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106325010 106325118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106327451 106327564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106328076 106328243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106331672 106331883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106336869 106337037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106347526 106347692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCAAATAATGATGCTGTTCTGAAGAGACTGGAGCAGAAGGGTGCAGAGGCAGATCAAATCATTGAAT
ATCTTAAGCAGCAAGTTTCTCTACTTAAGGAGAAAGCAATTTTGCAGGCAACTTTGAGGGAAGAGAAGAA
ACTTCGAGTTGAAAATGCTAAACTGAAGAAAGAAATTGAAGAACTGAAACAAGAGCTAATTCAGGCAGAA
ATTCAAAATGGAGTGAAGCAAATACCATTTCCATCTGGTACTCCACTGCACGCTAATTCTATGGTTTCTG
AAAATGTGATACAGTCTACAGCAGTAACAACCGTATCTTCTGGTACCAAAGAACAGATAAAAGGAGGAAC
AGGAGACGAAAAGAAAGCGAAAGAGAAAATTGAAAAGAAAGGAGAGAAGAAGGAGAAAAAACAGCAATCA
ATAGCTGGAAGTGCCGACTCTAAGCCAATAGATGTTTCCCGTCTGGATCTTCGAATTGGTTGCATCATAA
CTGCTAGAAAACACCCTGATGCAGATTCTTTGTATGTGGAAGAAGTAGATGTCGGAGAAATAGCCCCAAG
GACAGTTGTCAGTGGCCTGGTGAATCATGTTCCTCTTGAACAGATGCAAAATCGGATGGTGATTTTACTT
TGTAACCTGAAACCTGCAAAGATGAGGGGAGTATTATCTCAAGCAATGGTCATGTGTGCTAGTTCACCAG
AGAAAATTGAAATCTTGGCTCCTCCAAATGGGTCTGTTCCTGGAGACAGAATTACTTTTGATGCTTTCCC
AGGAGAGCCTGACAAGGAGCTGAATCCTAAGAAGAAGATTTGGGAGCAGATCCAGCCTGATCTTCACACT
AATGATGAGTGTGTGGCTACATACAAAGGAGTTCCCTTTGAGGTGAAAGGGAAGGGAGTATGTAGGGCTC
AAACCATGAGCAACAGTGGAATCAAATAA

Translation (312 aa):
MANNDAVLKRLEQKGAEADQIIEYLKQQVSLLKEKAILQATLREEKKLRVENAKLKKEIEELKQELIQAE
IQNGVKQIPFPSGTPLHANSMVSENVIQSTAVTTVSSGTKEQIKGGTGDEKKAKEKIEKKGEKKEKKQQS
IAGSADSKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILL
CNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHT
NDECVATYKGVPFEVKGKGVCRAQTMSNSGIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH