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Report for CCDS43669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43669.1 Public Homo sapiens 7 OR2A25 24 110 108 CCDS HistoryNCBI Gene:392138Re-query CCDS DB by CCDS ID:43669.1Re-query CCDS DB by GeneID:392138See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 43669.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408898.2 ENSP00000386167.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000408898.2Link to Ensembl Protein Viewer:ENSP00000386167.2Re-query CCDS DB by Nucleotide ID:ENST00000408898Re-query CCDS DB by Protein ID:ENSP00000386167
Original member Current member EBI ENST00000641441.1 ENSP00000493159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641441.1Link to Ensembl Protein Viewer:ENSP00000493159.1Re-query CCDS DB by Nucleotide ID:ENST00000641441Re-query CCDS DB by Protein ID:ENSP00000493159
Original member Current member EBI ENST00000641663.1 ENSP00000493343.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641663.1Link to Ensembl Protein Viewer:ENSP00000493343.1Re-query CCDS DB by Nucleotide ID:ENST00000641663Re-query CCDS DB by Protein ID:ENSP00000493343
Original member Current member NCBI NM_001004488.2 NP_001004488.1 Accepted alive Link to Nucleotide Sequence:NM_001004488.2Link to Protein Sequence:NP_001004488.1Re-query CCDS DB by Nucleotide ID:NM_001004488Re-query CCDS DB by Protein ID:NP_001004488Link to BLAST:NP_001004488.1
Original member Current member NCBI NM_001386096.1 NP_001373025.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386096.1Link to Protein Sequence:NP_001373025.1Re-query CCDS DB by Nucleotide ID:NM_001386096Re-query CCDS DB by Protein ID:NP_001373025Link to BLAST:NP_001373025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004488.1 310 A4D2G3 310 100% 0 0
NP_001373025.1 310 A4D2G3 310 100% 0 0

Chromosomal Locations for CCDS 43669.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144074220 144075152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGGGGGAAATCAGACTTCCATCACAGAGTTCCTCCTACTGGGATTTCCCATTGGCCCAAGGATTCAGA
TGCTCCTCTTTGGGCTCTTCTCCCTGTTCTACATCTTCATTCTGTTGGGGAACGGGACAATCCTGGGGCT
CATCTCACTGGACTCCAGACTCCACACCCCCATGTACTTCTTCCTCTCACACCTGGCGGTCGTCGACATC
GCCTGTGCTTGCAGCACGGTGCCCCAGATGCTGGTGAACCTCCTGCATCCAGCCAAGCCCATCTCCTTTG
CTGGCTGCATGACCCAGATGTTTCTGTTTTTGAGTTTTGCACATACAGAATGTCTCCTCCTGGTGGTGAT
GTCCTATGATCGGTACGTGGCCATCTGCCACCCTCTCCGATATTCTACCATCATGACCTGGAAAGTCTGC
ATCACTTTGGCATTGACTTCCTGGATTTTAGGAGTCTTATTGGCCCTTGTCCATCTAGTGTTACTGCTAC
CACTGTCCTTCTGTGGACCCCAGAAACTTAATCACTTTTTCTGTGAAATTATGGCTGTTCTCAAACTTGC
CTGTGCGGATACCCACATTAATGAGGTAATGGTTTTGGCAGGGGCAGTGTCTGTGCTGGTGGGAGCCTTC
TTTTCCACTGTAATATCTTATGTTCATATTCTATGTGCCATTCTAAAGATCCAGTCAGGAGAGGGGTGCC
AGAAAGCCTTCTCCATCTGCTCCTCCCACCTCTGTGTGGTTGGACTCTTTTATGGCACAGCCATCATCAT
GTATGTTGAGCCCCAGTATGAGAGCCCCAAGGAGCAGAAGAAATATCTCCTGCTGTTTCACAGCCTCTTC
AATCCCATGCTTAATCCCCTAATTTATAGTCTTAGGAACAAGGAAGTCCAAGGTACTCTAAAGAGGATGC
TTGAAAAGAAGAGAACTTCATGA

Translation (310 aa):
MGGNQTSITEFLLLGFPIGPRIQMLLFGLFSLFYIFILLGNGTILGLISLDSRLHTPMYFFLSHLAVVDI
ACACSTVPQMLVNLLHPAKPISFAGCMTQMFLFLSFAHTECLLLVVMSYDRYVAICHPLRYSTIMTWKVC
ITLALTSWILGVLLALVHLVLLLPLSFCGPQKLNHFFCEIMAVLKLACADTHINEVMVLAGAVSVLVGAF
FSTVISYVHILCAILKIQSGEGCQKAFSICSSHLCVVGLFYGTAIIMYVEPQYESPKEQKKYLLLFHSLF
NPMLNPLIYSLRNKEVQGTLKRMLEKKRTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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