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Report for CCDS2050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2050.1 Public Homo sapiens 2 CNOT11 24 110 108 CCDS HistoryNCBI Gene:55571Re-query CCDS DB by CCDS ID:2050.1Re-query CCDS DB by GeneID:55571See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289382.8 ENSP00000289382.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289382.8Link to Ensembl Protein Viewer:ENSP00000289382.3Re-query CCDS DB by Nucleotide ID:ENST00000289382Re-query CCDS DB by Protein ID:ENSP00000289382
Original member Current member NCBI NM_017546.5 NP_060016.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017546.5Link to Protein Sequence:NP_060016.3Re-query CCDS DB by Nucleotide ID:NM_017546Re-query CCDS DB by Protein ID:NP_060016Link to BLAST:NP_060016.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060016.3 510 Q9UKZ1 510 100% 0 0

Chromosomal Locations for CCDS 2050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 101252965 101253478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101257791 101257955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101262539 101262691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101264845 101265047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101266677 101266879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101269040 101269136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 101269216 101269413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGCCCGGCGGAGGGGCGAGCGCGGCGTCTGGCCGGCTTCTCACCGCCGCGGAGCAAAGAGGGTCCCGGG
AAGCGGCAGGGTCGGCGTCCAGGAGCGGCTTCGGGGGCTCCGGCGGCGGCAGAGGCGGAGCAAGCGGCCC
CGGGTCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGGCAGGATGAGCTTGACCCCGAAGGAGCTCTCGAGC
CTGCTGAGCATCATATCGGAGGAGGCGGGCGGCGGCAGCACCTTCGAGGGCCTGTCCACCGCCTTCCACC
ACTACTTCAGCAAGGCCGACCACTTCCGCCTGGGCTCGGTGCTCGTCATGCTGCTCCAGCAGCCCGACCT
GCTGCCTAGCGCGGCGCAGCGCCTCACGGCGCTCTACCTGCTCTGGGAGATGTACCGCACCGAGCCGCTG
GCCGCCAACCCCTTCGCCGCCAGCTTCGCGCACCTGCTCAACCCCGCGCCGCCCGCCCGCGGCGGCCAGG
AACCCGACCGCCCTCCGCTCTCAGGATTTTTACCTCCTATAACTCCACCAGAAAAGTTTTTTCTTTCCCA
GCTGATGCTGGCACCCCCACGGGAACTCTTCAAAAAGACGCCTCGCCAGATTGCACTGATGGACGTTGGA
AACATGGGCCAGTCTGTGGACATTAGTGGGCTTCAGTTAGCCTTGGCCGAACGCCAATCTGAATTGCCAA
CGCAAAGCAAAGCGAGCTTCCCCAGTATTCTCAGTGACCCAGACCCGGATTCTTCTAATTCTGGATTTGA
CAGCTCAGTTGCCTCTCAGATCACAGAAGCTTTAGTCAGCGGACCAAAGCCACCTATTGAAAGCCATTTT
CGACCAGAGTTTATTCGTCCACCGCCTCCACTCCACATTTGTGAGGATGAACTTGCTTGGCTAAACCCCA
CGGAGCCTGACCACGCGATCCAGTGGGATAAATCGATGTGTGTTAAGAATAGCACTGGTGTGGAGATCAA
ACGAATAATGGCCAAAGCCTTCAAAAGCCCCTTATCCTCTCCCCAACAAACACAGCTACTTGGTGAGTTG
GAAAAAGACCCCAAACTTGTCTACCATATTGGCCTCACCCCAGCCAAACTTCCTGACCTTGTGGAAAACA
ACCCTTTAGTCGCTATAGAAATGTTGCTGAAATTAATGCAGTCAAGCCAGATCACTGAGTATTTCTCTGT
CCTGGTCAATATGGACATGTCTTTACATTCAATGGAAGTTGTAAATCGACTAACTACAGCTGTTGATCTA
CCTCCTGAATTTATTCACCTTTATATATCAAATTGCATCTCTACTTGTGAACAGATTAAGGATAAATATA
TGCAGAATCGGTTGGTGCGTCTTGTGTGTGTGTTTCTCCAATCCTTGATCCGTAACAAAATTATTAATGT
ACAGGATTTGTTTATAGAAGTGCAGGCATTCTGTATTGAATTCAGTAGGATACGAGAAGCTGCTGGTCTT
TTCCGGTTGTTGAAGACATTGGATACTGGGGAAACACCTTCTGAGACCAAAATGTCAAAATAA

Translation (510 aa):
MPGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSS
LLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPL
AANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVG
NMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHF
RPEFIRPPPPLHICEDELAWLNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGEL
EKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL
PPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGL
FRLLKTLDTGETPSETKMSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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