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Report for CCDS28156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28156.1 Public Mus musculus 16 Slc15a2 23 108 98 CCDS HistoryNCBI Gene:57738Re-query CCDS DB by CCDS ID:28156.1Re-query CCDS DB by GeneID:57738See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28156.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023616.9 ENSMUSP00000023616.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023616.9Link to Ensembl Protein Viewer:ENSMUSP00000023616.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000023616Re-query CCDS DB by Protein ID:ENSMUSP00000023616
Original member NCBI NM_021301.3 NP_067276.2 Updated not alive Link to Nucleotide Sequence:NM_021301.3Link to Protein Sequence:NP_067276.2Re-query CCDS DB by Nucleotide ID:NM_021301Re-query CCDS DB by Protein ID:NP_067276
Current member NCBI NM_021301.4 NP_067276.3 Accepted alive Link to Nucleotide Sequence:NM_021301.4Link to Protein Sequence:NP_067276.3Re-query CCDS DB by Nucleotide ID:NM_021301Re-query CCDS DB by Protein ID:NP_067276Link to BLAST:NP_067276.3

Chromosomal Locations for CCDS 28156.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36751778 36751954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36752272 36752376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36752993 36753139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36753696 36753792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36754442 36754552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36756050 36756096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36756225 36756389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36757122 36757256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36757780 36757861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36759226 36759314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36760071 36760103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36761430 36761474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36761564 36761653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36761823 36761909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36762305 36762387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36772064 36772141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36772422 36772512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36774542 36774641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36775598 36775690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36781566 36781707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36782272 36782359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36784655 36784792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGCTTGAGGAGAGAGAGAGTAAGGAGCCAGCCATGAATCCTTTCCAGAAAAATGAGTCCAAGGAAACGC
TCTTTTCACCTGTCTCTACTGAAGAGATGCTGCCTGGACCTCCAAGCCCTCCAAAGAAGTCAACTCCGAA
GCTCTTCGGCTCTAGCTACCCACTCAGCATCGCCTTCATTGTGGTGAACGAATTCTGCGAGCGATTTTCC
TATTATGGCATGAAAGCTGTGTTGACCTTGTATTTCCTGTACTTCCTGCACTGGAATGAAGACACGTCCA
CATCTGTCTACCATGCCTTCAGCAGCCTCTGCTATTTCACCCCCATCTTGGGAGCAGCGATTGCTGACTC
CTGGCTGGGAAAATTCAAGACAATCATCTATCTGTCCCTGGTGTATGTTCTTGGCCATGTATTCAAGTCT
TTGGGTGCCATACCAATACTGGGAGGAAAAATGCTACATACAATCTTATCATTGGTTGGCCTGAGTCTCA
TAGCTCTGGGAACAGGAGGTATCAAACCCTGTGTGGCAGCTTTTGGCGGAGACCAGTTTGAAGAGGAACA
TGCAGAGGCACGGACTAGATACTTCTCGGTCTTCTACCTCTCCATCAATGCAGGGAGCTTGATTTCTATG
TTCATCACACCCATGCTAAGAGGGGATGTGAAGTGTTTTGGCGAAGACTGCTATGCATTGGCTTTTGGGA
TTCCAGGATTGCTCATGGTGCTGGCACTTGTTGTGTTTGCAATGGGAAGCAAGATGTACAGAAAACCGCC
TCCTGAAGGGAACATAGTGGCTCAAGTTACCAAATGTATATGGTTTGCTATCTGCAACCGCTTCAGGAAC
CGTTCTGAGGACATTCCAAAGCGACAACATTGGCTAGACTGGGCAGCAGAAAAATACCCAAAGCACCTCA
TTATGGACGTGAAGGCACTGACCAGGATACTGTTCCTTTATATCCCACTGCCCATGTTCTGGGCTCTTTT
GGACCAACAGGGCTCACGGTGGACTCTGCAAGCTAACAAAATGGATGGCGATTTGGGATTTTTTGTACTT
CAGCCGGATCAGATGCAGGTGCTAAATCCCTTTCTGGTCCTTGTCTTCATCCCATTGTTTGACCTTGTCA
TTTATCGGCTGATCTCCAAGTGCGGAGTTAACTTCTCGTCACTCAGGAAAATGGCTGTTGGTATGATCCT
AGCGTGCTTGGCATTTGCAGTTGCAGCGCTTGTAGAGATAAAAATAAATGGAATGATCCATCCTCAGCCA
GCTTCCCAAGAGATTTTTCTGCAAGTCCTGAACTTGGCAGATGGTGAAATAGAGGTGACAGTGCAGGGAA
ACAGAAATAATCCTCTCTTGGTGGAGTCCATCAGCTCTTTTCAGAACACAACACACTATTCGAAACTACG
CCTGGAGACAAAAAGCCAAGACTTACATTTTCATCTGAAGTACAACAACTTGTCTGTCCACAATGAGTAC
TCTGTAGAGGAGAAGAACTGTTACCAGTTGGTGGTTCATGAGAATGGAGAAAGTCTCTCCAGTATGCTGG
TAAAGGACACAGGAATCAAACCAGCCAATGGGATGACAGCCATCAGGTTTATTAACACTTTGCATAAAGA
CATGAATATTTCCTTGGATGCCAATGCTCCTCTCAGCGTGGGCAAAGACTATGGAGTGTCTGAGTACAGA
ACTGTGCAAAGAGGAAAGTATCCTGCAGTGCATTGTGAAACGGAAGACAATGTCTTTTCTCTCAATTTAG
GTCAACTAGACTTTGGTACAACATATTTGTTTGTGATCACTAATATCACCAACCGGGGTCTTCAGGCCTG
GAAGGCAGAAGACATTCCAGCCAATAAACTATCCATTGCATGGCAGCTACCACAGTATGTCCTGGTTACA
GCAGCAGAGGTCATGTTTTCTGTCACAGGACTTGAATTTTCTTATTCTCAGGCACCATCTAGCATGAAAT
CTGTGCTCCAGGCAGCCTGGCTGTTGACCGTTGCAGTTGGGAATATTATTGTGCTGATCGTGGCACAGTT
CAGTGGCCTGGTGCAGTGGGCTGAATTCGTTTTGTTTTCCTGCCTCCTGCTGGTGGTCTGCCTGATCTTC
TCCGTCATGGGCTACTACTATGTTCCTCTAAAGTCAGAGGGTATCCATGAGGCAACAGAAAAGCAGATTC
CTCACATCCAGGGGAATATGATCAACCTAGAAACCAAGAATACAAGGCTCTGA

Translation (740 aa):
MLEERESKEPAMNPFQKNESKETLFSPVSTEEMLPGPPSPPKKSTPKLFGSSYPLSIAFIVVNEFCERFS
YYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVFKS
LGAIPILGGKMLHTILSLVGLSLIALGTGGIKPCVAAFGGDQFEEEHAEARTRYFSVFYLSINAGSLISM
FITPMLRGDVKCFGEDCYALAFGIPGLLMVLALVVFAMGSKMYRKPPPEGNIVAQVTKCIWFAICNRFRN
RSEDIPKRQHWLDWAAEKYPKHLIMDVKALTRILFLYIPLPMFWALLDQQGSRWTLQANKMDGDLGFFVL
QPDQMQVLNPFLVLVFIPLFDLVIYRLISKCGVNFSSLRKMAVGMILACLAFAVAALVEIKINGMIHPQP
ASQEIFLQVLNLADGEIEVTVQGNRNNPLLVESISSFQNTTHYSKLRLETKSQDLHFHLKYNNLSVHNEY
SVEEKNCYQLVVHENGESLSSMLVKDTGIKPANGMTAIRFINTLHKDMNISLDANAPLSVGKDYGVSEYR
TVQRGKYPAVHCETEDNVFSLNLGQLDFGTTYLFVITNITNRGLQAWKAEDIPANKLSIAWQLPQYVLVT
AAEVMFSVTGLEFSYSQAPSSMKSVLQAAWLLTVAVGNIIVLIVAQFSGLVQWAEFVLFSCLLLVVCLIF
SVMGYYYVPLKSEGIHEATEKQIPHIQGNMINLETKNTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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