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Report for CCDS21989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21989.1 Public Mus musculus 7 Sirt3 23 108 98 CCDS HistoryNCBI Gene:64384Re-query CCDS DB by CCDS ID:21989.1Re-query CCDS DB by GeneID:64384See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026559.13 ENSMUSP00000026559.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026559.13Link to Ensembl Protein Viewer:ENSMUSP00000026559.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026559Re-query CCDS DB by Protein ID:ENSMUSP00000026559
Original member Current member EBI ENSMUST00000106048.9 ENSMUSP00000101663.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106048.9Link to Ensembl Protein Viewer:ENSMUSP00000101663.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106048Re-query CCDS DB by Protein ID:ENSMUSP00000101663
Original member Current member NCBI NM_001127351.1 NP_001120823.1 Accepted alive Link to Nucleotide Sequence:NM_001127351.1Link to Protein Sequence:NP_001120823.1Re-query CCDS DB by Nucleotide ID:NM_001127351Re-query CCDS DB by Protein ID:NP_001120823Link to BLAST:NP_001120823.1
Original member Current member NCBI NM_022433.2 NP_071878.2 Accepted alive Link to Nucleotide Sequence:NM_022433.2Link to Protein Sequence:NP_071878.2Re-query CCDS DB by Nucleotide ID:NM_022433Re-query CCDS DB by Protein ID:NP_071878Link to BLAST:NP_071878.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120823.1 257 Q8R104-2 257 100% 0 0
NP_071878.2 257 Q8R104-2 257 100% 0 0

Chromosomal Locations for CCDS 21989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140864063 140864083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140864975 140865184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140869489 140869650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140876354 140876454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140877650 140877882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140877957 140878003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGTGGGGGCCGGCATCAGCACACCCAGTGGCATCCCGGACTTCAGATCCCCAGGGAGCGGCCTCTACA
GCAACCTTCAGCAGTATGACATCCCGTACCCTGAAGCCATCTTTGAACTTGGCTTTTTCTTTCACAACCC
CAAGCCCTTTTTCATGTTGGCCAAGGAGCTGTACCCTGGGCACTACAGGCCCAATGTCACTCACTACTTC
CTGAGGCTCCTCCACGACAAGGAGCTGCTTCTGCGGCTCTATACACAGAACATCGACGGGCTTGAGAGAG
CATCTGGGATCCCTGCCTCAAAGCTGGTTGAAGCCCACGGGACCTTTGTAACAGCTACATGCACGGTCTG
TCGAAGGTCCTTCCCAGGGGAAGACATATGGGCTGATGTGATGGCGGACAGGGTGCCCCGCTGCCCTGTC
TGTACTGGCGTTGTGAAACCCGACATTGTGTTCTTTGGGGAGCAGCTGCCTGCAAGGTTCCTACTCCATA
TGGCTGACTTCGCTTTGGCAGATCTGCTACTCATTCTTGGGACCTCCCTGGAGGTGGAGCCTTTTGCCAG
CTTGTCTGAAGCAGTACAGAAATCAGTGCCCCGACTGCTCATCAATCGAGACTTGGTGGGGCCGTTCGTT
CTGAGTCCTCGAAGGAAAGATGTGGTCCAGCTAGGGGATGTAGTTCATGGTGTGGAAAGGCTGGTGGACC
TCCTGGGGTGGACACAAGAACTGCTGGATCTTATGCAGCGGGAACGTGGCAAGCTGGATGGACAGGACAG
ATAA

Translation (257 aa):
MVGAGISTPSGIPDFRSPGSGLYSNLQQYDIPYPEAIFELGFFFHNPKPFFMLAKELYPGHYRPNVTHYF
LRLLHDKELLLRLYTQNIDGLERASGIPASKLVEAHGTFVTATCTVCRRSFPGEDIWADVMADRVPRCPV
CTGVVKPDIVFFGEQLPARFLLHMADFALADLLLILGTSLEVEPFASLSEAVQKSVPRLLINRDLVGPFV
LSPRRKDVVQLGDVVHGVERLVDLLGWTQELLDLMQRERGKLDGQDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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