NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24282.1 Public Mus musculus 10 Pa2g4 23 108 98 CCDS HistoryNCBI Gene:18813Re-query CCDS DB by CCDS ID:24282.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24282.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026425.12 ENSMUSP00000026425.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026425.12Link to Ensembl Protein Viewer:ENSMUSP00000026425.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026425Re-query CCDS DB by Protein ID:ENSMUSP00000026425
Original member Current member EBI ENSMUST00000131728.3 ENSMUSP00000114434.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131728.3Link to Ensembl Protein Viewer:ENSMUSP00000114434.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000131728Re-query CCDS DB by Protein ID:ENSMUSP00000114434
Original member Current member NCBI NM_011119.3 NP_035249.1 Accepted alive Link to Nucleotide Sequence:NM_011119.3Link to Protein Sequence:NP_035249.1Re-query CCDS DB by Nucleotide ID:NM_011119Re-query CCDS DB by Protein ID:NP_035249Link to BLAST:NP_035249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035249.1 394 P50580-1 394 100% 0 0

Chromosomal Locations for CCDS 24282.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128558906 128558971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128559062 128559115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128559230 128559357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128559438 128559532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128560082 128560294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128560659 128560737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128560919 128560982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128562827 128562919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128563066 128563135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128563224 128563329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128563577 128563705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128565740 128565827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGTCGGGCGAAGACGAGCAGCAGGAGCAAACTATCGCCGAGGACCTGGTCGTGACCAAGTATAAGATGG
GGGGCGACATCGCCAACCGGGTGCTTCGATCTTTGGTGGAGGCTTCCAGCTCAGGTGTGTCTGTGCTGAG
CTTGTGTGAGAAAGGTGATGCCATGATTATGGAAGAGACAGGGAAGATCTTCAAGAAGGAAAAGGAGATG
AAGAAAGGTATTGCCTTTCCTACCAGCATTTCCGTAAATAACTGTGTGTGTCACTTCTCCCCTTTGAAGA
GTGACCAGGACTATATACTCAAGGAAGGTGACTTGGTAAAAATTGACCTTGGGGTTCATGTGGATGGCTT
CATTGCCAATGTGGCTCACACTTTTGTAATTGGTGTAGCTCAGGGGACCCAGGTAACAGGGCGGAAAGCA
GATGTCATTAAGGCCGCTCACCTATGTGCTGAAGCTGCCTTACGACTGGTCAAACCTGGAAACCAGAACA
CACAAGTGACTGAAGCATGGAACAAGGTTGCTCACTCATTTAACTGCACACCAATAGAAGGTATGCTGTC
ACACCAATTGAAGCAGCATGTGATTGATGGAGAGAAGACGATTATCCAGAACCCTACAGACCAGCAGAAG
AAGGACCATGAAAAGGCAGAATTTGAGGTGCATGAGGTTTATGCTGTAGATGTCCTCGTCAGCTCAGGAG
AAGGCAAGGCCAAAGATGCAGGACAGAGAACCACCATCTACAAGCGAGACCCCTCTAAACAATATGGCCT
GAAAATGAAAACTTCACGTGCCTTTTTCAGTGAGGTGGAACGGCGTTTTGATGCCATGCCGTTTACTTTA
AGAGCATTTGAAGATGAGAAGAAGGCTCGAATGGGTGTGGTAGAGTGTGCCAAACATGAGTTACTACAGC
CATTTAACGTTCTCTATGAGAAGGAGGGTGAATTTGTTGCCCAGTTTAAATTTACAGTTCTACTCATGCC
CAACGGCCCCATGCGGATAACCAGTGGTCCCTTTGAGCCTGACCTGTACAAGTCTGAGATGGAGGTTCAA
GATGCAGAGCTGAAGGCTCTTCTCCAGAGTTCTGCAAGTAGAAAAACCCAGAAAAAGAAGAAAAAGAAGG
CCTCCAAGACTGTAGAGAATGCCACCAGTGGAGAAACCTTAGAAGAGAATGGAGCTGGGGACTGA

Translation (394 aa):
MSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKEM
KKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIGVAQGTQVTGRKA
DVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQK
KDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTL
RAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQ
DAELKALLQSSASRKTQKKKKKKASKTVENATSGETLEENGAGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH