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Report for CCDS36595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36595.1 Public Mus musculus 13 Prl2c3 23 108 98 CCDS HistoryNCBI Gene:18812Re-query CCDS DB by CCDS ID:36595.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099805.2 ENSMUSP00000097393.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099805.2Link to Ensembl Protein Viewer:ENSMUSP00000097393.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099805Re-query CCDS DB by Protein ID:ENSMUSP00000097393
Original member Current member NCBI NM_011118.2 NP_035248.2 Accepted alive Link to Nucleotide Sequence:NM_011118.2Link to Protein Sequence:NP_035248.2Re-query CCDS DB by Nucleotide ID:NM_011118Re-query CCDS DB by Protein ID:NP_035248Link to BLAST:NP_035248.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035248.2 224 P04768 224 100% 0 0

Chromosomal Locations for CCDS 36595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 12790931 12791107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12791992 12792174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12793288 12793395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12796831 12797006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 12799982 12800012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCTCCCTTCTTCGATTCAACCATGCTCCTGGATACTGCTCCTACTACTGGTGAACAGCTCGTTATTGT
GGAAGAATGTTGCCTCATTTCCCATGTGTGCAATGAGGAATGGTCGTTGCTTTATGTCCTTTGAAGACAC
ATTTGAATTAGCCGGCAGTTTGTCTCATAATATCAGTATAGAAGTTTCAGAACTGTTCAATGAATTTGAA
AAACATTATTCTAACGTGTCTGGGCTCAGAGACAAAAGCCCCATGAGATGCAATACTTCTTTCCTTCCAA
CTCCAGAAAACAAGGAACAAGCCAGGCTCACACACTATGCAGCTCTTCTGAAATCAGGAGCCATGATTTT
GGATGCCTGGGAAAGCCCTCTGGACGATCTAGTGAGTGAATTATCTACCATAAAAAATGTCCCTGATATA
ATCATCTCCAAAGCCACAGACATAAAGAAAAAGATCAACGCAGTCCGGAACGGGGTTAATGCCCTCATGA
GCACCATGCTTCAGAATGGAGATGAAGAAAAGAAGAACCCTGCCTGGTTCTTGCAATCTGACAATGAAGA
TGCTCGCATTCATTCTTTATATGGCATGATCAGCTGCCTAGACAATGACTTTAAGAAGGTTGATATTTAT
CTCAACGTCCTGAAGTGTTACATGTTAAAAATAGATAACTGCTGA

Translation (224 aa):
MLPSSIQPCSWILLLLLVNSSLLWKNVASFPMCAMRNGRCFMSFEDTFELAGSLSHNISIEVSELFNEFE
KHYSNVSGLRDKSPMRCNTSFLPTPENKEQARLTHYAALLKSGAMILDAWESPLDDLVSELSTIKNVPDI
IISKATDIKKKINAVRNGVNALMSTMLQNGDEEKKNPAWFLQSDNEDARIHSLYGMISCLDNDFKKVDIY
LNVLKCYMLKIDNC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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