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Report for CCDS20683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20683.1 Public Mus musculus 6 Gys2 23 108 98 CCDS HistoryNCBI Gene:232493Re-query CCDS DB by CCDS ID:20683.1Re-query CCDS DB by GeneID:232493See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032371.7 ENSMUSP00000032371.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032371.7Link to Ensembl Protein Viewer:ENSMUSP00000032371.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032371Re-query CCDS DB by Protein ID:ENSMUSP00000032371
Original member NCBI NM_145572.2 NP_663547.2 Updated not alive Link to Nucleotide Sequence:NM_145572.2Link to Protein Sequence:NP_663547.2Re-query CCDS DB by Nucleotide ID:NM_145572Re-query CCDS DB by Protein ID:NP_663547
Current member NCBI NM_145572.3 NP_663547.2 Accepted alive Link to Nucleotide Sequence:NM_145572.3Link to Protein Sequence:NP_663547.2Re-query CCDS DB by Nucleotide ID:NM_145572Re-query CCDS DB by Protein ID:NP_663547Link to BLAST:NP_663547.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663547.2 704 Q8VCB3 704 100% 0 0

Chromosomal Locations for CCDS 20683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 142423409 142423633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142427354 142427434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142428509 142428672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142430290 142430385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142445986 142446112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142448389 142448502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142449430 142449508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142450469 142450528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142451534 142451640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142454422 142454542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142455132 142455249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142456289 142456433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142459382 142459564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142461134 142461325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142463225 142463406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142472681 142472801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGCTCAGAGGCCGCTCCTTGTCGGTGACATCCCTTGGTGGGCTCCCTGTGTGGGAAGCTGAAAGACTCC
CTGTGGAAGACTTACTGCTTTTTGAAGTTTCTTGGGAGGTGACCAACAAAGTTGGGGGCATCTGTACTGT
GATCCAGACCAAGGCCAAAACGACAGCCGATGAGTGGGGAGAGAATTACTTCCTGATAGGTCCGTACTTT
GAGCATAATATGAAGACTCAAGTAGAACAATGTGAGCCCACCAACGATGCTGTCAGAAAAGCTGTGGATG
CGATGAATAAACATGGCTGCCAGGTGCATTTTGGAAGATGGCTCATAGAAGGGAGTCCCTACGTGGTGCT
CTTTGACATCAGCTCCTCAGCATGGAACCTGGACAGATGGAAGGGTGACTTCTGGGAAGCTTGTGGCGTT
GGCATCCCTCATCATGACCGAGAAGCTAACGACATGCTCATATTTGGGTCTTTAACTGCCTGGTTCTTAA
AGGAGGTGACAGACCACGCAGACGGTAAACACGTCATTGCCCAATTCCATGAATGGCAGGCTGGGACTGG
GCTGATCCTTTCTCGTGCCAGGAAACTCCCCATTGCCACAGTATTTACAACCCATGCCACACTGCTTGGG
CGTTATCTCTGTGCAGCAAATATTGACTTCTACAACCAGCTTGACAAGTTCGACATTGACAAAGAGGCCG
GGGAGAGGCAGATATACCACCGCTACTGCATGGAGCGGGCATCCGTGCACTGTGCGCACGTGTTCACCAC
AGTGTCAGAAATCACAGCCATCGAGGCAGAGCACATGCTGAAGAGGAAGCCTGATGTAGTGACTCCAAAT
GGTTTGAATGTTAAGAAGTTTTCTGCAGTGCATGAATTTCAAAATCTCCACGCCATGTACAAGGCCAGGA
TACAGGATTTCGTTCGAGGTCATTTCTATGGTCATCTGGACTTTGATCTTGAGAAGACTTTATTCCTCTT
CATTGCTGGGAGATATGAATTCTCAAACAAAGGAGCAGACATCTTCCTGGAGTCCTTATCCAGGCTTAAT
TTCCTCCTGAGGATGCATAAGAGTAACGTCACCGTGGTAGTGTTTTTCATCATGCCTGCCAAGACAAACA
ATTTCAACGTGGAAACCCTGAAGGGCCAGGCAGTGCGGAAACAGCTGTGGGACACTGTGCATTGTTTGAA
GGAGAAGTTTGGGAAGAAACTCTATGACGGGTTATTAAGAGGAGAAATTCCTGACATGAATAGTATTTTG
GATCGAGATGACTTAACAATTATGAAAAGGGCCATTTTTTCAACTCAGAGACAGTCTTTGCCTCCTGTGA
CCACTCACAATATGATCGATGATTCCACGGATCCCATCCTCAGCACCATTAGACGAATCGGACTTTTCAA
CAATCGTGCAGACAGAGTCAAGGTGATTTTACACCCAGAATTCCTGTCCTCCACCAGCCCTCTATTGCCC
ATGGATTATGAAGAGTTTGTCCGAGGTTGTCACCTTGGGGTGTTTCCATCGTACTATGAACCCTGGGGTT
ACACACCAGCTGAATGCACAGTGATGGGCATCCCCAGTGTGACTACAAACCTCTCCGGTTTTGGGTGTTT
CGTGCAGGAGCATGTGGCTGACCCTACTGCATACGGTATTTACATCGTGGACAGACGCTTCCGCTCTCCA
GACGATTCTTGCAACCAGCTGACTCAGTTCCTCTACGGGTTTTGTAAACAGTCACGCCGGCAAAGGATCA
TTCAGAGGAACCGCACGGAGAGGCTCTCAGATCTCCTGGACTGGAGATACCTGGGCAGATATTACCAGCA
TGCCAGACACCTGACACTGAGCAGGGCTTTTCCAGACAAATTCCACCTAGAGCCCACATCACCACCAACG
ACGGATGGCTTTAAGTATCCCAGGCCCTCCTCAGTACCACCTTCTCCGTCAGGATCCCAGGCCTCCAGTC
CTCAGTGCAGTGATGCGGAAGACGAAGAAGATGAGGATGAGAGGTATGATGAGGAAGAGGAGGCTGAGAG
GGATCGGCTAAATATCAAGTCACCGTTTTCTCTGAACCACTTTCCAAAGGGGAAGAAAAAGCTTCATGGA
GAATATAAGAACTGA

Translation (704 aa):
MLRGRSLSVTSLGGLPVWEAERLPVEDLLLFEVSWEVTNKVGGICTVIQTKAKTTADEWGENYFLIGPYF
EHNMKTQVEQCEPTNDAVRKAVDAMNKHGCQVHFGRWLIEGSPYVVLFDISSSAWNLDRWKGDFWEACGV
GIPHHDREANDMLIFGSLTAWFLKEVTDHADGKHVIAQFHEWQAGTGLILSRARKLPIATVFTTHATLLG
RYLCAANIDFYNQLDKFDIDKEAGERQIYHRYCMERASVHCAHVFTTVSEITAIEAEHMLKRKPDVVTPN
GLNVKKFSAVHEFQNLHAMYKARIQDFVRGHFYGHLDFDLEKTLFLFIAGRYEFSNKGADIFLESLSRLN
FLLRMHKSNVTVVVFFIMPAKTNNFNVETLKGQAVRKQLWDTVHCLKEKFGKKLYDGLLRGEIPDMNSIL
DRDDLTIMKRAIFSTQRQSLPPVTTHNMIDDSTDPILSTIRRIGLFNNRADRVKVILHPEFLSSTSPLLP
MDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFVQEHVADPTAYGIYIVDRRFRSP
DDSCNQLTQFLYGFCKQSRRQRIIQRNRTERLSDLLDWRYLGRYYQHARHLTLSRAFPDKFHLEPTSPPT
TDGFKYPRPSSVPPSPSGSQASSPQCSDAEDEEDEDERYDEEEEAERDRLNIKSPFSLNHFPKGKKKLHG
EYKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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