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Report for CCDS16059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16059.1 Public Mus musculus 2 Pla2r1 23 108 98 CCDS HistoryNCBI Gene:18779Re-query CCDS DB by CCDS ID:16059.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 16059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112525.4 ENSMUSP00000108144.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112525.4Link to Ensembl Protein Viewer:ENSMUSP00000108144.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112525Re-query CCDS DB by Protein ID:ENSMUSP00000108144
Original member Current member NCBI NM_008867.2 NP_032893.1 Accepted alive Link to Nucleotide Sequence:NM_008867.2Link to Protein Sequence:NP_032893.1Re-query CCDS DB by Nucleotide ID:NM_008867Re-query CCDS DB by Protein ID:NP_032893Link to BLAST:NP_032893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032893.1 1487 Q62028-1 1487 100% 0 0

Chromosomal Locations for CCDS 16059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 60420013 60420302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60420408 60420440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60422605 60422781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60424259 60424375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60425352 60425492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60427627 60427795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60428506 60428744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60431954 60432101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60432544 60432674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60433333 60433450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60441086 60441222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60443277 60443380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60444131 60444195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60447383 60447540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60448257 60448292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60448834 60448966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60452402 60452486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60455086 60455231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60458250 60458452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60479404 60479567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60495255 60495367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60497560 60497658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60502039 60502196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60504127 60504321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60514906 60515046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60515587 60515700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60522766 60522939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60530367 60530540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60534723 60535103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60553010 60553130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4464 nt):
ATGGTGCAATGGTTAGCGATGCTGCAGCTGCTCTGGCTGCAACAGCTGCTGCTGCTGGGGATTCACCAGG
GCATCGCCCAAGATTTGACTCACATCCAGGAACCGTCCCTCGAGTGGCGTGATAAAGGAATTTTCATTAT
CCAGAGCGAGAGCCTGAAGACATGCATTCAGGCAGGTAAATCTGTACTGACCCTGGAGAACTGCAAGCAG
CCAAACGAGCACATGCTGTGGAAATGGGTTTCCGACGACCACCTCTTTAATGTGGGAGGCAGTGGCTGCC
TAGGCCTGAACATATCTGCTCTGGAGCAACCATTAAAGCTCTATGAATGTGATTCCACCCTCATTTCCCT
GAGATGGCACTGTGACAGGAAGATGATCGAGGGCCCACTCCAGTACAAGGTCCAGGTGAAGTCTGACAAC
ACAGTGGTGGCAAGAAAACAGATCCATAGGTGGATCGCCTACACGTCCAGTGGTGGGGACATTTGTGAGC
ATCCTAGCAGAGATTTATATACGTTAAAAGGGAATGCCCATGGGATGCCTTGCGTGTTTCCTTTCCAGTT
CAAAGGTCACTGGCACCATGACTGTATCCGAGAAGGGCAGAAAGAGCACCTGCTGTGGTGTGCCACCACA
AGCCGATACGAAGAAGACGAGAAGTGGGGATTCTGCCCAGATCCTACCTCTATGAAGGTGTTCTGTGATG
CTACGTGGCAAAGGAATGGCAGTTCACGCATTTGCTACCAGTTCAACCTGCTTTCGTCTCTGTCTTGGAA
CCAGGCCCATTCTTCATGCCTGATGCAAGGAGGTGCTTTGCTAAGTATTGCAGATGAAGATGAAGAAGAT
TTCATAAGGAAGCACTTGAGCAAGGTAGTCAAGGAAGTGTGGATTGGTTTGAACCAGCTGGATGAGAAGG
CTGGCTGGCAGTGGTCTGATGGAACACCACTCAGCTACCTGAACTGGAGCCAAGAGATAACTCCTGGGCC
ATTTGTTGAGCATCACTGTGGAACCCTGGAGGTTGTTTCAGCTGCCTGGAGGAGCAGGGACTGCGAGTCC
ACCTTGCCTTATATATGCAAACGGGATCTAAACCACACTGCGCAGGGAATCCTGGAAAAGGACTCCTGGA
AATACCATGCCACTCACTGTGATCCTGACTGGACTCCCTTCAATCGTAAATGCTACAAACTTAAGAAAGA
CAGAAAGAGCTGGCTTGGGGCTCTGCACTCTTGCCAATCGAATGACAGCGTGTTGATGGATGTAGCTTCG
TTGGCAGAGGTGGAGTTTCTTGTAAGCCTCCTTAGGGATGAAAATGCATCAGAAACGTGGATTGGTTTGA
GTAGCAATAAAATCCCAGTCTCCTTTGAGTGGTCCAGTGGCTCCTCTGTCATCTTTACTAACTGGTACCC
TCTGGAGCCTCGAATTCTTCCAAACAGAAGACAACTGTGTGTCTCAGCCGAGGAATCTGACGGACGCTGG
AAAGTGAAAGATTGTAAAGAAAGACTCTTTTATATTTGTAAGAAAGCAGGGCAAGTCCCTGCTGATGAGC
AGTCCGGATGTCCAGCGGGCTGGGAGAGACACGGCAGATTTTGTTACAAAATCGACACAGTCCTGCGAAG
CTTTGAGGAGGCTTCGAGTGGCTATTACTGCTCTCCTGCGCTCCTGACCATCACCAGCCGATTTGAACAA
GCTTTTATTACCAGTTTGATCAGTAGTGTGGCAGAAAAGGACAGTTATTTTTGGATTGCTCTTCAAGACC
AAAACAATACAGGAGAGTACACTTGGAAGACCGTGGGGCAGAGGGAGCCGGTGCAGTACACATACTGGAA
CACGCGTCAACCCAGCAATCGTGGTGGCTGCGTTGTTGTACGAGGAGGAAGTTCACTTGGTCGCTGGGAA
GTGAAGGATTGTAGCGACTTTAAGGCAATGTCTCTGTGCAAGACACCAGTCAAAATCTGGGAGAAAACAG
AGCTTGAAGAGAGATGGCCGTTTCACCCCTGCTATATGGATTGGGAATCAGCCACTGGTCTGGCCAGTTG
CTTCAAGGTGTTTCATAGCGAAAAGGTCCTGATGAAAAGATCGTGGAGAGAAGCAGAAGCATTCTGTGAG
GAGTTTGGGGCTCACCTCGCAAGCTTTGCCCATATAGAGGAAGAAAATTTCGTGAATGAGCTTCTACATT
CAAAATTTAATTGGACACAGGAAAGGCAGTTCTGGATTGGATTTAATAGAAGGAACCCACTGAATGCTGG
TTCTTGGGCGTGGTCTGACGGGTCACCTGTTGTCTCTTCATTTTTAGACAATGCTTATTTTGAAGAAGAT
GCAAAAAATTGTGCTGTGTATAAGGCAAACAAAACATTGTTGCCCTCGAACTGTGCCTCCAAACACGAGT
GGATATGCAGAATTCCAAGAGATGTGAGACCCAAGTTTCCAGACTGGTACCAGTACGATGCGCCGTGGCT
CTTCTATCAGAACGCCGAGTACCTCTTCCACACCCACCCAGCGGAGTGGGCCACCTTTGAGTTTGTCTGC
GGCTGGCTGCGAAGTGACTTCCTCACAATTTATTCTGCTCAGGAGCAAGAATTCATCCACAGCAAAATCA
AAGGGCTGACAAAGTATGGTGTGAAGTGGTGGATCGGACTTGAAGAAGGAGGAGCCAGAGATCAAATTCA
GTGGAGTAACGGGTCGCCCGTGATATTCCAGAACTGGGACAAAGGAAGAGAAGAAAGAGTGGATAGCCAG
AGAAAGCGATGTGTCTTCATATCTTCCATAACAGGGCTCTGGGGGACTGAGAACTGCTCTGTTCCTTTGC
CCAGCATCTGTAAGCGAGTGAAGATATGGGTCATCGAGAAGGAGAAGCCGCCGACACAGCCTGGGACATG
CCCCAAGGGGTGGCTGTATTTTAACTATAAGTGCTTCCTGGTGACAATTCCCAAGGACCCTCGGGAGCTG
AAGACCTGGACAGGTGCTCAGGAATTCTGTGTCGCCAAGGGTGGGACGCTGGTCTCCATCAAAAGTGAAT
TGGAACAAGCTTTTATTACTATGAATCTTTTTGGCCAGACCACGAATGTGTGGATAGGGTTACAAAGTAC
TAATCATGAGAAATGGGTAAATGGGAAGCCTCTGGTGTACTCTAACTGGTCTCCATCGGATATAATAAAT
ATACCAAGTTATAACACCACTGAATTTCAAAAGCATATTCCTCTCTGTGCCCTCATGTCAAGTAATCCTA
ATTTCCATTTTACTGGAAAATGGTATTTCGATGACTGTGGGAAAGAAGGCTATGGATTTGTCTGTGAAAA
AATGCAAGACACCCTTGAACACCATGTAAACGTGTCTGATACGTCTGCAATCCCCAGTACGTTAGAATAT
GGAAACAGAACTTATAAGATAATCCGTGGTAATATGACTTGGTATGCAGCCGGAAAGTCCTGCCGGATGC
ACAGAGCAGAACTGGCCAGCATTCCAGATGCGTTTCACCAGGCCTTCCTCACGGTTCTCCTCAGCAGGCT
GGGACACACCCACTGGATTGGACTCTCCACCACAGACAATGGTCAGACTTTTGACTGGTCGGACGGCACC
AAATCCCCTTTCACCTATTGGAAGGATGAGGAGTCGGCCTTTCTTGGTGACTGCGCTTTTGCTGACACCA
ACGGACGCTGGCATAGCACAGCCTGCGAGTCATTTCTGCAAGGCGCCATTTGTCACGTAGTCACTGAAAC
AAAGGCATTTGAGCACCCAGGGCTGTGCTCAGAAACATCAGTTCCCTGGATAAAATTTAAAGGTAACTGC
TACAGTTTTTCCACAGTCCTGGACAGCAGGAGTTTTGAAGATGCTCATGAATTTTGCAAAAGTGAAGGAT
CTAATCTGTTGGCAATCAGGGATGCGGCTGAAAATTCATTTCTCCTGGAAGAGCTTCTTGCGTTTGGGTC
TTCTGTGCAGATGGTTTGGTTGAATGCTCAGTTTGATAATAACAACAAAACCTTAAGGTGGTTTGACGGA
ACACCCACAGAGCAGTCCAACTGGGGCCTTCGGAAGCCAGACATGGACCACCTCAAGCCACATCCGTGTG
TTGTCCTGAGGATCCCGGAAGGAATATGGCACTTTACCCCATGCGAGGACAAAAAGGGGTTCATATGTAA
AATGGAAGCAGGCATCCCAGCTGTAACGGCGCAGCCAGAGAAAGGACTAAGCCACAGCATCGTTCCTGTC
ACAGTAACGCTGACGTTGATAATAGCCCTGGGCATTTTCATGCTTTGCTTCTGGATATATAAGCAGAAAA
GTGACATCTTCCAGAGACTCACGGGGTCTCGGGGTTCTTACTACCCCACACTCAACTTCAGCACAGCACA
TTTAGAAGAGAACATTCTCATTTCTGATCTTGAGAAGAACACCAATGATGAAGAAGTTAGAGATGCTCCA
GCTACAGAGAGCAAAAGAGGCCACAAAGGGCGTCCTATCTGCATTTCCCCTTAA

Translation (1487 aa):
MVQWLAMLQLLWLQQLLLLGIHQGIAQDLTHIQEPSLEWRDKGIFIIQSESLKTCIQAGKSVLTLENCKQ
PNEHMLWKWVSDDHLFNVGGSGCLGLNISALEQPLKLYECDSTLISLRWHCDRKMIEGPLQYKVQVKSDN
TVVARKQIHRWIAYTSSGGDICEHPSRDLYTLKGNAHGMPCVFPFQFKGHWHHDCIREGQKEHLLWCATT
SRYEEDEKWGFCPDPTSMKVFCDATWQRNGSSRICYQFNLLSSLSWNQAHSSCLMQGGALLSIADEDEED
FIRKHLSKVVKEVWIGLNQLDEKAGWQWSDGTPLSYLNWSQEITPGPFVEHHCGTLEVVSAAWRSRDCES
TLPYICKRDLNHTAQGILEKDSWKYHATHCDPDWTPFNRKCYKLKKDRKSWLGALHSCQSNDSVLMDVAS
LAEVEFLVSLLRDENASETWIGLSSNKIPVSFEWSSGSSVIFTNWYPLEPRILPNRRQLCVSAEESDGRW
KVKDCKERLFYICKKAGQVPADEQSGCPAGWERHGRFCYKIDTVLRSFEEASSGYYCSPALLTITSRFEQ
AFITSLISSVAEKDSYFWIALQDQNNTGEYTWKTVGQREPVQYTYWNTRQPSNRGGCVVVRGGSSLGRWE
VKDCSDFKAMSLCKTPVKIWEKTELEERWPFHPCYMDWESATGLASCFKVFHSEKVLMKRSWREAEAFCE
EFGAHLASFAHIEEENFVNELLHSKFNWTQERQFWIGFNRRNPLNAGSWAWSDGSPVVSSFLDNAYFEED
AKNCAVYKANKTLLPSNCASKHEWICRIPRDVRPKFPDWYQYDAPWLFYQNAEYLFHTHPAEWATFEFVC
GWLRSDFLTIYSAQEQEFIHSKIKGLTKYGVKWWIGLEEGGARDQIQWSNGSPVIFQNWDKGREERVDSQ
RKRCVFISSITGLWGTENCSVPLPSICKRVKIWVIEKEKPPTQPGTCPKGWLYFNYKCFLVTIPKDPREL
KTWTGAQEFCVAKGGTLVSIKSELEQAFITMNLFGQTTNVWIGLQSTNHEKWVNGKPLVYSNWSPSDIIN
IPSYNTTEFQKHIPLCALMSSNPNFHFTGKWYFDDCGKEGYGFVCEKMQDTLEHHVNVSDTSAIPSTLEY
GNRTYKIIRGNMTWYAAGKSCRMHRAELASIPDAFHQAFLTVLLSRLGHTHWIGLSTTDNGQTFDWSDGT
KSPFTYWKDEESAFLGDCAFADTNGRWHSTACESFLQGAICHVVTETKAFEHPGLCSETSVPWIKFKGNC
YSFSTVLDSRSFEDAHEFCKSEGSNLLAIRDAAENSFLLEELLAFGSSVQMVWLNAQFDNNNKTLRWFDG
TPTEQSNWGLRKPDMDHLKPHPCVVLRIPEGIWHFTPCEDKKGFICKMEAGIPAVTAQPEKGLSHSIVPV
TVTLTLIIALGIFMLCFWIYKQKSDIFQRLTGSRGSYYPTLNFSTAHLEENILISDLEKNTNDEEVRDAP
ATESKRGHKGRPICISP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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