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Report for CCDS91672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91672.1 Public Homo sapiens 12 CAPRIN2 24 110 108 CCDS HistoryNCBI Gene:65981Re-query CCDS DB by CCDS ID:91672.1Re-query CCDS DB by GeneID:65981See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91672.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000684863.1 ENSP00000510181.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684863.1Link to Ensembl Protein Viewer:ENSP00000510181.1Re-query CCDS DB by Nucleotide ID:ENST00000684863Re-query CCDS DB by Protein ID:ENSP00000510181
Original member Current member NCBI NM_001385528.1 NP_001372457.1 Accepted alive Link to Nucleotide Sequence:NM_001385528.1Link to Protein Sequence:NP_001372457.1Re-query CCDS DB by Nucleotide ID:NM_001385528Re-query CCDS DB by Protein ID:NP_001372457Link to BLAST:NP_001372457.1
Original member Current member NCBI NM_001385529.1 NP_001372458.1 Accepted alive Link to Nucleotide Sequence:NM_001385529.1Link to Protein Sequence:NP_001372458.1Re-query CCDS DB by Nucleotide ID:NM_001385529Re-query CCDS DB by Protein ID:NP_001372458Link to BLAST:NP_001372458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372457.1 794 Q6IMN6-4 794 100% 0 0
NP_001372458.1 794 Q6IMN6-4 794 100% 0 0

Chromosomal Locations for CCDS 91672.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 30709902 30710470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30711566 30711629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30713785 30713885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30714959 30715144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30716508 30716676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30719079 30719225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30720811 30720915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30723259 30723314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30724370 30724451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30725966 30726088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30728648 30729325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30730239 30730282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30731343 30731403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGCTAATACAATCAGAGAAAAAAACACAATTATCGAAGACTGAATCTGTCAAAGAGTCAGAGTCTCTAA
TGGAATTTGCCCAGCCAGAGATACAACCACAAGAGTTTCTTAACAGACGCTATATGACAGAAGTAGATTA
TTCAAACAAACAAGGCGAAGAGCAACCTTGGGAAGCAGATTATGCTAGAAAACCAAATCTCCCAAAACGT
TGGGATATGCTTACTGAACCAGATGGTCAAGAGAAGAAACAGGAGTCCTTTAAGTCCTGGGAGGCTTCTG
GTAAGCACCAGGAGGTATCCAAGCCTGCAGTTTCCTTAGAACAGAGGAAACAAGACACCTCAAAACTCAG
GTCTACTCTGCCGGAAGAGCAGAAGAAGCAGGAGATCTCCAAATCCAAGCCATCTCCTAGCCAGTGGAAG
CAAGATACACCTAAATCCAAAGCAGGGTATGTTCAAGAGGAACAAAAGAAACAGGAGACACCAAAGCTGT
GGCCAGTTCAGCTGCAGAAAGAACAAGATCCAAAGAAGCAAACTCCAAAGTCTTGGACACCTTCCATGCA
GAGCGAACAGAACACCACCAAGTCATGGACCACTCCCATGTGTGAAGAACAGGATTCAAAACAGCCAGAG
ACTCCAAAATCCTGGGAAAACAATGTTGAGAGTCAAAAACACTCTTTAACATCACAGTCACAGATTTCTC
CAAAGTCCTGGGGAGTAGCTACAGCAAGCCTCATACCAAATGACCAGCTGCTGCCCAGGAAGTTGAACAC
AGAACCCAAAGATGTGCCTAAGCCTGTGCATCAGCCTGTAGGTTCTTCCTCTACCCTTCCGAAGGATCCA
GTATTGAGGAAAGAAAAACTGCAGGATCTGATGACTCAGATTCAAGGAACTTGTAACTTTATGCAAGAGT
CTGTTCTTGACTTTGACAAACCTTCAAGTGCAATTCCAACGTCACAACCGCCTTCAGCTACTCCAGGTAG
CCCCGTAGCATCTAAAGAACAAAATCTGTCCAGTCAAAGTGATTTTCTTCAAGAGCCGTTACAGGCTACT
TCTTCTCCAGTTACTTGTAGCTCAAATGCTTGCTTGGTTACTACCGATCAGGCTTCTTCTGGATCTGAAA
CAGAGTTTATGACCTCAGAGACTCCTGAGGCAGCAATTCCCCCAGGCAAGCAACCGTCTTCACTAGCTTC
TCCAAATCCTCCCATGGCAAAGGGCTCTGAACAGGGCTTCCAGTCACCTCCAGCAAGTAGTAGTTCAGTA
ACCATTAACACAGCACCCTTTCAAGCCATGCAGACAGTATTTAACGTTAATGCACCTCTGCCTCCACGAA
AAGAACAAGAAATAAAAGAATCCCCTTATTCACCTGGCTACAATCAAAGTTTTACCACAGCAAGTACACA
AACACCACCCCAGTGCCAACTGCCATCTATACATGTAGAACAAACTGTCCATTCTCAAGAGACTGCAGCA
AATTATCATCCTGATGGAACTATTCAAGTAAGCAATGGTAGCCTTGCCTTTTACCCAGCACAGACGAATG
TGTTTCCCAGACCTACTCAGCCATTTGTCAATAGCCGGGGATCTGTTAGAGGATGTACTCGTGGTGGGAG
ATTAATAACCAATTCCTATCGGTCCCCTGGTGGTTATAAAGGTTTTGATACTTATAGAGGACTCCCTTCA
ATTTCCAATGGAAATTATAGCCAGCTGCAGTTCCAAGCTAGAGAGTATTCTGGAGCACCTTATTCCCAAA
GGGATAATTTCCAGCAGTGTTATAAGCGAGGAGGGACATCTGGTGGTCCACGAGCAAATTCGAGAGCAGG
GTGGAGTGATTCTTCTCAGGTGAGCAGCCCAGAAAGAGACAACGAAACCTTTAACAGTGGTGACTCTGGA
CAAGGAGACTCCCGTAGCATGACCCCTGTGGATGTGCCAGTGACAAATCCAGCAGCCACCATACTGCCAG
TACACGTCTACCCTCTGCCTCAGCAGATGCGAGTTGCCTTCTCAGCAGCCAGAACCTCTAATCTGGCCCC
TGGAACTTTAGACCAACCTATTGTGTTTGATCTTCTTCTGAACAACTTAGGAGAAACTTTTGATCTTCAG
CTTGGTAGATTTAATTGCCCAGTGAATGGCACTTACGTTTTCATTTTTCACATGCTAAAGCTGGCAGTGA
ATGTGCCACTGTATGTCAACCTCATGAAGAATGAAGAGGTCTTGGTATCAGCCTATGCCAATGATGGTGC
TCCAGACCATGAAACTGCTAGCAATCATGCAATTCTTCAGCTCTTCCAGGGAGACCAGATATGGTTACGT
CTGCACAGGGGAGCAATTTATGGAAGTAGCTGGAAATATTCTACGTTTTCAGGCTATCTTCTTTATCAAG
ATTGA

Translation (794 aa):
MLIQSEKKTQLSKTESVKESESLMEFAQPEIQPQEFLNRRYMTEVDYSNKQGEEQPWEADYARKPNLPKR
WDMLTEPDGQEKKQESFKSWEASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWK
QDTPKSKAGYVQEEQKKQETPKLWPVQLQKEQDPKKQTPKSWTPSMQSEQNTTKSWTTPMCEEQDSKQPE
TPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDP
VLRKEKLQDLMTQIQGTCNFMQESVLDFDKPSSAIPTSQPPSATPGSPVASKEQNLSSQSDFLQEPLQAT
SSPVTCSSNACLVTTDQASSGSETEFMTSETPEAAIPPGKQPSSLASPNPPMAKGSEQGFQSPPASSSSV
TINTAPFQAMQTVFNVNAPLPPRKEQEIKESPYSPGYNQSFTTASTQTPPQCQLPSIHVEQTVHSQETAA
NYHPDGTIQVSNGSLAFYPAQTNVFPRPTQPFVNSRGSVRGCTRGGRLITNSYRSPGGYKGFDTYRGLPS
ISNGNYSQLQFQAREYSGAPYSQRDNFQQCYKRGGTSGGPRANSRAGWSDSSQVSSPERDNETFNSGDSG
QGDSRSMTPVDVPVTNPAATILPVHVYPLPQQMRVAFSAARTSNLAPGTLDQPIVFDLLLNNLGETFDLQ
LGRFNCPVNGTYVFIFHMLKLAVNVPLYVNLMKNEEVLVSAYANDGAPDHETASNHAILQLFQGDQIWLR
LHRGAIYGSSWKYSTFSGYLLYQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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