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Report for CCDS48241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48241.1 Public Mus musculus 1 Fam178b 23 108 98 CCDS HistoryNCBI Gene:381337Re-query CCDS DB by CCDS ID:48241.1Re-query CCDS DB by GeneID:381337See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170295.7 ENSMUSP00000132846.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170295.7Link to Ensembl Protein Viewer:ENSMUSP00000132846.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170295Re-query CCDS DB by Protein ID:ENSMUSP00000132846
Original member NCBI NM_001126046.1 NP_001119518.1 Updated not alive Link to Nucleotide Sequence:NM_001126046.1Link to Protein Sequence:NP_001119518.1Re-query CCDS DB by Nucleotide ID:NM_001126046Re-query CCDS DB by Protein ID:NP_001119518
Current member NCBI NM_001126046.2 NP_001119518.1 Accepted alive Link to Nucleotide Sequence:NM_001126046.2Link to Protein Sequence:NP_001119518.1Re-query CCDS DB by Nucleotide ID:NM_001126046Re-query CCDS DB by Protein ID:NP_001119518Link to BLAST:NP_001119518.1

Chromosomal Locations for CCDS 48241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36562988 36563020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36564330 36564482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36564831 36564908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36578519 36578644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36585916 36586003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36600123 36600220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36600408 36600584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36600867 36600951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36608417 36608531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36632420 36632504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36635167 36635272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36644210 36644362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36659364 36659425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36660735 36660947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGCAGATGCCCAGGGACTCGTTCCCCACTGACTGGAGCCCACCTCCTGTAGAGTTCCTAAACAAGCCCA
AGAAAGCACCTCCAGCCAAAAAGGGACCCCTTGAGGACTTGGAGAAGGACCCTCCAGATCCCAACCAGAA
GGTGGAGCTGGCCTCCCTGGAGGAGCTCTTCTGGAACATGGCAAGTCCAAGCCAACAGGCTGGGACCCCA
GAGATTTCCTCTGGGAGCTCACAATGCTACATCAATAACTTAGATTACTTACTGCAAGAAAAGAGGATGC
TGGTGGAGAAGTTCTCCGTGTCCCTGCAGGTCATCTCGCCAGTGCATCCGGGTGAAACTGTATTCTTGCC
TAGGCGTCACCCTTTGCCTTGCTTCCTGGACTCCTCTCGTCTAAAGCCGCACAGCCCATTGGAAGAGCTG
TTCCTCAGGTCCTCGCTGCCCGAGCAGCTCTCCTTCCTACACAATGGCCTCCTGAGCAACCTCTACCTGC
ATGCTGCTGACTGCCCTCAGCCTCTGCTGCAGTGGCTGTTCCAGTTGTTAACATGGCCTCCAGAAACATC
TTCAAGAGCTTTTGGCCTCCTCTGGGATCTCAGTATAGATGGACTGTTCCGTCAGCCTGATGAAGACATG
CATTTCTGGTGTCCCTCACTGCAGGAGGTCAAAGAGGTGTTCAGCAGCCTGGGAGCCTACAACCCCGCCC
TGTACCCACAGGGGCCCTTCCAGCACAGCGCAAGGGTGCTTGAGAGTGAGGCCAGCCTGGATTCACAGGA
TCCTCCCCAGGAAGTGGCCTTGGACATTAAGTTGAACTACATCTACAAGTTCCTGACCCTGTGTCTCCTA
GTCCGGCCAGTGTCCTACACGGATGCCAGCATCTTGGATCTGATGGAGCTGCTGTGCCGCGCAGGCCTGG
ATGTAGGGTTGTGCCTGCTGCCCAAGACTGACCTCCAGCAACTCCTGCTCCTGCTGCTGGAGAGAATCCA
AGAGTGGCCTGGAAAGCTCCAGCCCCTTTGCTGTGCCCTGAGCTGGGTGTCCGACCACCACCACAACCTG
CTGGCCCTCGTGCAGTTCTTCCTGGATGTGACGCCTCGGGGCAGGCAGCTGAGAAGTCAGCTGAGTCTTG
TGATTATTGCCCGGATGCTGGGCCAGCAGGAGTCACTTCCTTTCTCGGCAGAGAAAACCCAGCTAGCCCT
GCTCAGCCAGCTCCTCAGCCTCATGAGGCCTTCGTCCCTCAGGCAGTGTCTGGGCATTGAAACCTTGCCA
TCCAGTCTAGGGCAACACTCAAAGGCCAGTGCCGAGCTAGACTACAAGGTCTGCTATCTGTGCCACAGCC
TCCTGACACTAGCTGGGGTCGTGGTCAGTAGCCAGGACATTACTCCCAATCAATGGGGTGAGCTACAGCT
GTTGTGCATGCAGTTGGACCGTCATATCAGCACCCATATCCGGGAGAGCCCTCAGGCCATGCACCGGACC
AAACTCAAGGACCTAGCTACCCAGACTTACATCCGCTGGCAGGACTTGCTGGCCCACTGTCAGCCCCAGG
GTCAGTACTTCAGCCCTTGGAAAGACATTTAA

Translation (523 aa):
MQMPRDSFPTDWSPPPVEFLNKPKKAPPAKKGPLEDLEKDPPDPNQKVELASLEELFWNMASPSQQAGTP
EISSGSSQCYINNLDYLLQEKRMLVEKFSVSLQVISPVHPGETVFLPRRHPLPCFLDSSRLKPHSPLEEL
FLRSSLPEQLSFLHNGLLSNLYLHAADCPQPLLQWLFQLLTWPPETSSRAFGLLWDLSIDGLFRQPDEDM
HFWCPSLQEVKEVFSSLGAYNPALYPQGPFQHSARVLESEASLDSQDPPQEVALDIKLNYIYKFLTLCLL
VRPVSYTDASILDLMELLCRAGLDVGLCLLPKTDLQQLLLLLLERIQEWPGKLQPLCCALSWVSDHHHNL
LALVQFFLDVTPRGRQLRSQLSLVIIARMLGQQESLPFSAEKTQLALLSQLLSLMRPSSLRQCLGIETLP
SSLGQHSKASAELDYKVCYLCHSLLTLAGVVVSSQDITPNQWGELQLLCMQLDRHISTHIRESPQAMHRT
KLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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