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Report for CCDS11528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11528.1 Public Homo sapiens 17 HOXB3 24 110 108 CCDS HistoryNCBI Gene:3213Re-query CCDS DB by CCDS ID:11528.1Re-query CCDS DB by GeneID:3213See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311626.8 ENSP00000308252.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311626.8Link to Ensembl Protein Viewer:ENSP00000308252.4Re-query CCDS DB by Nucleotide ID:ENST00000311626Re-query CCDS DB by Protein ID:ENSP00000308252
Original member Current member EBI ENST00000470495.1 ENSP00000417207.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000470495.1Link to Ensembl Protein Viewer:ENSP00000417207.1Re-query CCDS DB by Nucleotide ID:ENST00000470495Re-query CCDS DB by Protein ID:ENSP00000417207
Original member Current member EBI ENST00000476342.1 ENSP00000418892.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476342.1Link to Ensembl Protein Viewer:ENSP00000418892.1Re-query CCDS DB by Nucleotide ID:ENST00000476342Re-query CCDS DB by Protein ID:ENSP00000418892
Original member Current member EBI ENST00000498678.6 ENSP00000420595.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000498678.6Link to Ensembl Protein Viewer:ENSP00000420595.1Re-query CCDS DB by Nucleotide ID:ENST00000498678Re-query CCDS DB by Protein ID:ENSP00000420595
Original member Current member NCBI NM_001384747.1 NP_001371676.1 Accepted alive Link to Nucleotide Sequence:NM_001384747.1Link to Protein Sequence:NP_001371676.1Re-query CCDS DB by Nucleotide ID:NM_001384747Re-query CCDS DB by Protein ID:NP_001371676Link to BLAST:NP_001371676.1
Original member Current member NCBI NM_001384749.1 NP_001371678.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384749.1Link to Protein Sequence:NP_001371678.1Re-query CCDS DB by Nucleotide ID:NM_001384749Re-query CCDS DB by Protein ID:NP_001371678Link to BLAST:NP_001371678.1
Original member Current member NCBI NM_002146.4 NP_002137.4 Accepted alive Link to Nucleotide Sequence:NM_002146.4Link to Protein Sequence:NP_002137.4Re-query CCDS DB by Nucleotide ID:NM_002146Re-query CCDS DB by Protein ID:NP_002137Link to BLAST:NP_002137.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371676.1 431 P14651-1 431 100% 0 0
NP_001371678.1 431 P14651-1 431 100% 0 0
NP_002137.4 431 P14651-1 431 100% 0 0

Chromosomal Locations for CCDS 11528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48550334 48551181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48552027 48552474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGCAGAAAGCCACCTACTACGACAACGCCGCGGCTGCTCTCTTCGGAGGCTATTCCTCGTACCCTGGCA
GCAATGGCTTCGGCTTCGATGTCCCCCCCCAACCCCCATTTCAGGCCGCCACGCACCTGGAGGGCGACTA
CCAGCGCTCAGCTTGCTCGCTGCAGTCCCTGGGCAACGCTGCCCCACATGCCAAGAGCAAGGAGCTCAAC
GGCAGCTGCATGAGGCCGGGTCTGGCCCCCGAGCCCCTGTCGGCCCCGCCTGGCTCACCCCCGCCCAGTG
CCGCACCTACCAGTGCCACTAGCAACAGCAGTAATGGGGGCGGGCCCAGCAAAAGTGGTCCCCCAAAGTG
CGGTCCCGGCACCAACTCCACCCTCACCAAACAGATATTCCCCTGGATGAAAGAGTCGAGGCAAACGTCC
AAGCTGAAAAACAACTCCCCCGGCACAGCAGAGGGCTGTGGTGGCGGCGGCGGTGGCGGCGGCGGCGGAG
GCAGTGGTGGCAGCGGGGGCGGTGGCGGCGGCGGCGGGGGAGGGGACAAGAGCCCCCCGGGGTCGGCGGC
GTCCAAGCGGGCGCGGACGGCGTACACGAGCGCGCAGCTGGTGGAGCTGGAGAAGGAGTTCCATTTTAAC
CGCTACCTGTGCCGGCCTCGCCGTGTAGAGATGGCCAACCTGCTGAACCTCAGCGAGCGGCAGATCAAGA
TCTGGTTCCAGAACCGGCGCATGAAGTACAAGAAGGACCAGAAGGCCAAGGGATTGGCCTCGTCGTCGGG
GGGCCCATCTCCAGCCGGCAGCCCCCCGCAGCCCATGCAGTCCACGGCCGGCTTCATGAACGCCTTACAC
TCCATGACCCCCAGCTACGAGAGCCCGTCCCCACCCGCCTTCGGTAAAGCCCACCAGAATGCCTACGCGC
TGCCCTCCAACTACCAGCCCCCTCTCAAAGGCTGCGGCGCCCCGCAGAAGTACCCTCCGACCCCGGCGCC
CGAGTATGAGCCGCACGTCCTCCAAGCCAACGGGGGCGCCTACGGGACGCCCACCATGCAGGGCAGTCCG
GTGTACGTGGGCGGGGGCGGCTACGCGGATCCGCTGCCGCCCCCTGCCGGCCCCTCCCTCTATGGCCTCA
ACCACCTTTCCCATCACCCTTCCGGGAACCTGGACTACAACGGGGCGCCCCCTATGGCGCCCAGCCAGCA
CCACGGACCCTGCGAACCCCACCCCACCTACACAGACCTCTCCTCTCACCACGCGCCTCCTCCTCAGGGT
AGAATCCAAGAAGCGCCCAAATTAACACACCTGTGA

Translation (431 aa):
MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELN
GSCMRPGLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTS
KLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFN
RYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALH
SMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSP
VYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQG
RIQEAPKLTHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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