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Report for CCDS91644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91644.1 Public Homo sapiens 12 PLEKHG6 24 110 108 CCDS HistoryNCBI Gene:55200Re-query CCDS DB by CCDS ID:91644.1Re-query CCDS DB by GeneID:55200See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91644.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536531.5 ENSP00000442836.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536531.5Link to Ensembl Protein Viewer:ENSP00000442836.1Re-query CCDS DB by Nucleotide ID:ENST00000536531Re-query CCDS DB by Protein ID:ENSP00000442836
Original member Current member NCBI NM_001384602.1 NP_001371531.1 Accepted alive Link to Nucleotide Sequence:NM_001384602.1Link to Protein Sequence:NP_001371531.1Re-query CCDS DB by Nucleotide ID:NM_001384602Re-query CCDS DB by Protein ID:NP_001371531Link to BLAST:NP_001371531.1

Chromosomal Locations for CCDS 91644.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6312227 6312364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6313629 6313784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6315005 6315169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6315554 6315649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6315869 6315919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6316255 6316404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6317303 6317413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6317547 6317696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6317857 6317994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6318301 6318420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6318745 6318957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGAAGGCCTTTGGTCCTCCACATGAGGGCCCCCTCCAAGGACTCGTGGCCTCCCGCATTGAGACTTATG
GGGGCCGGCATCGAGCCTCTGCTCAGAGCACTGCTGGCAGACTCTATCCCCGAGGATACCCTGTGCTGGA
TCCCAGTCGCCGACGCCTCCAGCAGTATGTCCCCTTTGCCAGGGGTTCTGGCCAGGCCCGAGGCCTGTCA
CCCATGAGACTGCGAGATCCAGAGCCCGAGAAGAGGCACGGGGGCCATGTGGGGGCTGGCCTGCTTCACT
CCCCCAAACTCAAGGAACTCACCAAGGCCCATGAGCTGGAGGTGAGGCTGCACACTTTCAGCATGTTTGG
GATGCCCCGGCTGCCCCCTGAGGACCGGCGGCACTGGGAGATAGGAGAGGGTGGCGACAGTGGCCTGACC
ATCGAGAAGTCCTGGAGGGAGCTGGTGCCTGGGCACAAGGAGATGAGCCAGGAGCTCTGCCACCAACAGG
AGGCCCTGTGGGAGCTCCTGACCACCGAGCTGATCTACGTGAGAAAGCTCAAGATCATGACTGATCTGCT
AGCCGCCGGCCTGCTGAACCTGCAGCGAGTGGGACTGCTGATGGAAGTGTCAGCTGAGACCCTGTTTGGA
AATGTCCCCAGCCTGATTCGAACCCACCGGAGCTTTTGGGATGAGGTGCTGGGGCCCACCCTGGAGGAGA
CTCGGGCCTCGGGCCAGCCTCTGGACCCCATTGGTCTGCAAAGTGGCTTCCTGACGTTTGGCCAGCGGTT
CCACCCCTATGTCCAGTACTGCCTCCGAGTGAAGCAGACCATGGCTTACGCCCGAGAACAGCAAGAAACT
AACCCTCTCTTCCATGCCTTCGTGCAGTGGTGTGAGAAGCACAAGCGCTCTGGGAGGCAGATGCTCTGTG
ACTTGCTTATCAAGCCCCACCAGCGCATCACCAAGTACCCACTGCTGCTCCATGCTGTGCTCAAGAGGAG
CCCCGAGGCACGAGCCCAAGAGGCCCTGAATGCCATGATTGAAGCCGTGGAGTCATTCCTGCGACACATC
AATGGGCAGGTCCGCCAGGGCGAAGAGCAAGAGAGCTTGGCGGCTGCAGCACAACGCATCGGGCCCTACG
AGGTGCTGGAGCCACCCAGTGATGAGGTGGAGAAGAACCTGCGCCCATTCTCCACCCTGGACCTGACGTC
CCCCATGCTGGGGGTTGCATCTGAGCACACCAGACAGCTGCTGCTGGAGGGGCCTGTGCGAGTGAAGGAG
GGACGAGAAGGGAAGCTGGACGTGTACCTGTTCCTCTTCTCTGATGTGCTCCTTGTGACCAAGCCCCAGC
GCAAGGCGGACAAAGCCAAGGTCATCCGACCCCCTCTCATGCTGGAGAAGCTCGTGTGCCAACCCCTGCG
AGACCCCAGTACGTCCTTCCTTCAGGGAGTCTTTTCTTCTCCCTCTTCTCAGCGAGGGGAAGGAGGAGCT
GGGACGGAGATCAAATAA

Translation (495 aa):
MKAFGPPHEGPLQGLVASRIETYGGRHRASAQSTAGRLYPRGYPVLDPSRRRLQQYVPFARGSGQARGLS
PMRLRDPEPEKRHGGHVGAGLLHSPKLKELTKAHELEVRLHTFSMFGMPRLPPEDRRHWEIGEGGDSGLT
IEKSWRELVPGHKEMSQELCHQQEALWELLTTELIYVRKLKIMTDLLAAGLLNLQRVGLLMEVSAETLFG
NVPSLIRTHRSFWDEVLGPTLEETRASGQPLDPIGLQSGFLTFGQRFHPYVQYCLRVKQTMAYAREQQET
NPLFHAFVQWCEKHKRSGRQMLCDLLIKPHQRITKYPLLLHAVLKRSPEARAQEALNAMIEAVESFLRHI
NGQVRQGEEQESLAAAAQRIGPYEVLEPPSDEVEKNLRPFSTLDLTSPMLGVASEHTRQLLLEGPVRVKE
GREGKLDVYLFLFSDVLLVTKPQRKADKAKVIRPPLMLEKLVCQPLRDPSTSFLQGVFSSPSSQRGEGGA
GTEIK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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