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Report for CCDS12402.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12402.2 Public Homo sapiens 19 GATAD2A 24 110 108 CCDS HistoryNCBI Gene:54815Re-query CCDS DB by CCDS ID:12402.2Re-query CCDS DB by GeneID:54815See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12402.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358713.7 ENSP00000351552.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358713.7Link to Ensembl Protein Viewer:ENSP00000351552.3Re-query CCDS DB by Nucleotide ID:ENST00000358713Re-query CCDS DB by Protein ID:ENSP00000351552
Original member Current member EBI ENST00000360315.7 ENSP00000353463.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360315.7Link to Ensembl Protein Viewer:ENSP00000353463.3Re-query CCDS DB by Nucleotide ID:ENST00000360315Re-query CCDS DB by Protein ID:ENSP00000353463
Original member Current member NCBI NM_001384529.1 NP_001371458.1 Accepted alive Link to Nucleotide Sequence:NM_001384529.1Link to Protein Sequence:NP_001371458.1Re-query CCDS DB by Nucleotide ID:NM_001384529Re-query CCDS DB by Protein ID:NP_001371458Link to BLAST:NP_001371458.1
Original member Current member NCBI NM_001384530.1 NP_001371459.1 Accepted alive Link to Nucleotide Sequence:NM_001384530.1Link to Protein Sequence:NP_001371459.1Re-query CCDS DB by Nucleotide ID:NM_001384530Re-query CCDS DB by Protein ID:NP_001371459Link to BLAST:NP_001371459.1
Original member Current member NCBI NM_001384531.1 NP_001371460.1 Accepted alive Link to Nucleotide Sequence:NM_001384531.1Link to Protein Sequence:NP_001371460.1Re-query CCDS DB by Nucleotide ID:NM_001384531Re-query CCDS DB by Protein ID:NP_001371460Link to BLAST:NP_001371460.1
Original member Current member NCBI NM_001384532.1 NP_001371461.1 Accepted alive Link to Nucleotide Sequence:NM_001384532.1Link to Protein Sequence:NP_001371461.1Re-query CCDS DB by Nucleotide ID:NM_001384532Re-query CCDS DB by Protein ID:NP_001371461Link to BLAST:NP_001371461.1
Original member Current member NCBI NM_001384533.1 NP_001371462.1 Accepted alive Link to Nucleotide Sequence:NM_001384533.1Link to Protein Sequence:NP_001371462.1Re-query CCDS DB by Nucleotide ID:NM_001384533Re-query CCDS DB by Protein ID:NP_001371462Link to BLAST:NP_001371462.1
Original member Current member NCBI NM_017660.5 NP_060130.3 Accepted alive Link to Nucleotide Sequence:NM_017660.5Link to Protein Sequence:NP_060130.3Re-query CCDS DB by Nucleotide ID:NM_017660Re-query CCDS DB by Protein ID:NP_060130Link to BLAST:NP_060130.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371458.1 633 Q86YP4-1 633 100% 0 0
NP_001371459.1 633 Q86YP4-1 633 100% 0 0
NP_001371460.1 633 Q86YP4-1 633 100% 0 0
NP_001371461.1 633 Q86YP4-1 633 100% 0 0
NP_001371462.1 633 Q86YP4-1 633 100% 0 0
NP_060130.3 633 Q86YP4-1 633 100% 0 0

Chromosomal Locations for CCDS 12402.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19465346 19465614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19492306 19492438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19492581 19492712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19494294 19494383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19495754 19495885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19496052 19496219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19498443 19498722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19501121 19501416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19501969 19502043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19502331 19502526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19505344 19505474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGACCGAAGAAGCATGCCGAACACGGAGTCAGAAACGAGCGCTTGAACGGGACCCAACAGAGGACGATG
TGGAGAGCAAGAAAATAAAAATGGAGAGAGGATTGTTGGCTTCAGATTTAAACACTGACGGAGACATGAG
GGTGACACCTGAGCCGGGAGCAGGTCCAACCCAAGGATTGCTGAGGGCAACAGAGGCCACGGCCATGGCC
ATGGGCAGAGGCGAAGGGCTGGTGGGCGATGGGCCCGTGGACATGCGCACCTCACACAGTGACATGAAGT
CCGAGAGGAGACCCCCCTCACCTGACGTGATTGTGCTCTCCGACAACGAGCAGCCCTCGAGCCCGAGAGT
GAATGGGCTGACCACGGTGGCCTTGAAGGAGACTAGCACCGAGGCCCTCATGAAAAGCAGTCCTGAAGAA
CGAGAAAGGATGATCAAGCAGCTGAAGGAAGAATTGAGGTTAGAAGAAGCAAAACTCGTGTTGTTGAAAA
AGTTGCGGCAGAGTCAAATACAAAAGGAAGCCACCGCCCAGAAGCCCACAGGTTCTGTTGGGAGCACCGT
GACCACCCCTCCCCCGCTTGTTCGGGGCACTCAGAACATTCCTGCTGGCAAGCCATCACTCCAGACCTCT
TCAGCTCGGATGCCCGGCAGTGTCATACCCCCGCCCCTGGTCCGAGGTGGGCAGCAGGCGTCCTCGAAGC
TGGGGCCACAGGCGAGCTCACAGGTCGTCATGCCCCCACTCGTCAGGGGGGCTCAGCAAATCCACAGCAT
TAGGCAACATTCCAGCACAGGGCCACCGCCCCTCCTCCTGGCCCCCCGGGCGTCGGTGCCCAGTGTGCAG
ATTCAGGGACAGAGGATCATCCAGCAGGGCCTCATCCGCGTCGCCAATGTTCCCAACACCAGCCTGCTCG
TCAACATCCCACAGCCCACCCCAGCATCACTGAAGGGGACAACAGCCACCTCCGCTCAGGCCAACTCCAC
CCCCACTAGTGTGGCCTCTGTGGTCACCTCTGCCGAGTCTCCAGCAAGCCGACAGGCGGCCGCCAAGCTG
GCGCTGCGCAAACAGCTGGAGAAGACGCTACTCGAGATCCCCCCACCCAAGCCCCCAGCCCCAGAGATGA
ACTTCCTGCCCAGCGCCGCCAACAACGAGTTCATCTACCTGGTCGGCCTGGAGGAGGTGGTGCAGAACCT
ACTGGAGACACAAGGCAGGATGTCGGCCGCCACTGTGCTGTCCCGGGAGCCCTACATGTGTGCACAGTGC
AAGACGGACTTCACGTGCCGCTGGCGGGAGGAGAAGAGCGGCGCCATCATGTGTGAGAACTGCATGACAA
CCAACCAGAAGAAGGCGCTCAAGGTGGAGCACACCAGCCGGCTGAAGGCCGCCTTTGTGAAGGCGCTGCA
GCAGGAACAGGAGATTGAGCAGCGGCTCCTGCAGCAGGGCACGGCCCCTGCACAGGCCAAGGCCGAGCCC
ACCGCTGCCCCACACCCCGTGCTGAAGCAGGTCATAAAACCCCGGCGTAAGTTGGCGTTCCGCTCAGGAG
AGGCCCGCGACTGGAGTAACGGGGCTGTGCTACAGGCCTCCAGCCAGCTGTCCCGGGGTTCGGCCACGAC
GCCCCGAGGTGTCCTGCACACGTTCAGTCCGTCACCCAAACTGCAGAACTCAGCCTCGGCCACAGCCCTG
GTCAGCAGGACCGGCAGACATTCTGAGAGAACCGTGAGCGCCGGCAAGGGCAGCGCCACCTCCAACTGGA
AGAAGACGCCCCTCAGCACAGGCGGGACCCTTGCGTTTGTCAGCCCAAGCCTGGCGGTGCACAAGAGCTC
CTCGGCCGTGGACCGCCAGCGAGAGTACCTCCTGGACATGATCCCACCCCGCTCCATCCCCCAGTCAGCC
ACGTGGAAATAG

Translation (633 aa):
MTEEACRTRSQKRALERDPTEDDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGLLRATEATAMA
MGRGEGLVGDGPVDMRTSHSDMKSERRPPSPDVIVLSDNEQPSSPRVNGLTTVALKETSTEALMKSSPEE
RERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPTGSVGSTVTTPPPLVRGTQNIPAGKPSLQTS
SARMPGSVIPPPLVRGGQQASSKLGPQASSQVVMPPLVRGAQQIHSIRQHSSTGPPPLLLAPRASVPSVQ
IQGQRIIQQGLIRVANVPNTSLLVNIPQPTPASLKGTTATSAQANSTPTSVASVVTSAESPASRQAAAKL
ALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGRMSAATVLSREPYMCAQC
KTDFTCRWREEKSGAIMCENCMTTNQKKALKVEHTSRLKAAFVKALQQEQEIEQRLLQQGTAPAQAKAEP
TAAPHPVLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSPSPKLQNSASATAL
VSRTGRHSERTVSAGKGSATSNWKKTPLSTGGTLAFVSPSLAVHKSSSAVDRQREYLLDMIPPRSIPQSA
TWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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