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Report for CCDS5404.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5404.1 |
Public |
Homo sapiens |
7 |
HOXA3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:3200](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5404.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:3200](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5404.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000317201.7 |
ENSP00000324884.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000317201.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000324884.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000317201](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000324884](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000396352.8 |
ENSP00000379640.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000396352.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000379640.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000396352](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000379640](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000612286.5 |
ENSP00000484411.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000612286.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000484411.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000612286](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000484411](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384335.1 |
NP_001371264.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384335.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371264.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384335](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371264](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371264.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384336.1 |
NP_001371265.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384336.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371265.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384336](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371265](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371265.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384337.1 |
NP_001371266.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384337.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371266.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384337](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371266](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371266.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384338.1 |
NP_001371267.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384338.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371267.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384338](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371267](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371267.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384339.1 |
NP_001371268.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384339.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371268.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384339](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371268](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371268.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384340.1 |
NP_001371269.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384340.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371269.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384340](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371269](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371269.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384341.1 |
NP_001371270.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384341.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371270.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384341](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371270](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371270.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384342.1 |
NP_001371271.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384342.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371271.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384342](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371271](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371271.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384343.1 |
NP_001371272.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384343.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371272.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384343](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371272](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371272.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384344.1 |
NP_001371273.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384344.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371273.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384344](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371273](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371273.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384345.1 |
NP_001371274.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384345.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371274.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384345](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371274](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371274.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384346.1 |
NP_001371275.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384346.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371275.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384346](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371275](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371275.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_030661.5 |
NP_109377.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_030661.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_109377.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_030661](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_109377](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_109377.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_153631.3 |
NP_705895.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_153631.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_705895.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_153631](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_705895](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_705895.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 5404.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1332 nt): ATGCAAAAAGCGACCTACTACGACAGCTCGGCGATCTACGGTGGCTACCCCTACCAGGCAGCCAACGGGT TCGCTTATAATGCCAATCAGCAGCCGTACCCGGCGTCCGCCGCTTTGGGCGCCGACGGCGAGTACCACCG ACCCGCCTGCTCCCTCCAGTCTCCCTCCAGCGCCGGGGGCCACCCCAAGGCACACGAACTGAGTGAGGCG TGCCTGCGCACCCTGAGCGCCCCACCTAGCCAGCCTCCAAGCCTGGGAGAGCCGCCCCTGCACCCGCCGC CGCCCCAGGCCGCGCCCCCTGCCCCACAGCCGCCTCAGCCCGCACCTCAGCCCCCTGCACCTACCCCTGC CGCGCCCCCGCCTCCCTCTTCTGCCTCCCCTCCTCAGAATGCCAGCAACAACCCTACCCCTGCCAACGCG GCCAAGAGCCCCCTGCTCAACTCACCCACAGTGGCCAAACAAATCTTCCCCTGGATGAAAGAGTCTCGAC AAAACACAAAGCAGAAAACCAGCAGCTCCAGCTCAGGCGAAAGCTGCGCTGGCGACAAGAGCCCGCCGGG GCAGGCTTCGTCCAAGCGCGCGCGCACGGCCTACACGAGCGCGCAGCTGGTGGAGCTGGAGAAAGAGTTC CACTTCAACCGCTACCTGTGCCGGCCGCGCCGGGTGGAGATGGCCAATCTGCTGAACCTCACTGAGCGCC AGATCAAGATCTGGTTCCAGAATCGCCGCATGAAGTACAAAAAGGATCAGAAGGGCAAGGGCATGCTAAC GTCATCGGGGGGCCAGTCTCCAAGTCGCAGCCCCGTGCCCCCCGGAGCCGGTGGCTATCTGAACTCTATG CATTCGCTGGTCAACAGCGTCCCGTATGAGCCCCAGTCGCCCCCGCCCTTCTCCAAGCCCCCCCAGGGTA CCTACGGGCTGCCCCCCGCCTCCTACCCTGCGTCCCTGCCCAGCTGCGCACCCCCGCCACCCCCACAGAA GCGCTACACGGCGGCAGGGGCGGGCGCAGGGGGCACCCCCGACTATGACCCGCACGCTCATGGCCTGCAG GGCAACGGCAGCTATGGGACCCCACACATACAGGGAAGCCCCGTCTTCGTGGGGGGCAGCTATGTGGAGC CCATGAGCAACTCCGGGCCAGCCCTCTTTGGTCTAACTCACCTCCCCCACGCTGCCTCGGGCGCCATGGA CTATGGGGGTGCCGGGCCGCTGGGCAGCGGCCACCACCACGGGCCGGGGCCTGGGGAGCCGCACCCCACC TACACGGACCTTACCGGCCACCATCCTTCTCAGGGAAGAATTCAGGAAGCACCCAAGCTCACCCACCTGT GA
Translation (443 aa): MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEA CLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANA AKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEF HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSM HSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQ GNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT YTDLTGHHPSQGRIQEAPKLTHL
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