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Report for CCDS26649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26649.1 Public Mus musculus 13 Pcsk1 23 108 98 CCDS HistoryNCBI Gene:18548Re-query CCDS DB by CCDS ID:26649.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26649.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022075.5 ENSMUSP00000022075.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022075.5Link to Ensembl Protein Viewer:ENSMUSP00000022075.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022075Re-query CCDS DB by Protein ID:ENSMUSP00000022075
Original member Current member NCBI NM_013628.3 NP_038656.1 Accepted alive Link to Nucleotide Sequence:NM_013628.3Link to Protein Sequence:NP_038656.1Re-query CCDS DB by Nucleotide ID:NM_013628Re-query CCDS DB by Protein ID:NP_038656Link to BLAST:NP_038656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038656.1 753 P63239 753 100% 0 0

Chromosomal Locations for CCDS 26649.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 75090062 75090241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75093083 75093187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75096290 75096400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75097901 75098047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75099277 75099353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75105951 75106039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75110818 75110990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75112542 75112754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75115237 75115337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75125850 75126083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75126724 75126881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75127810 75127943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75130042 75130203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 75131942 75132319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGGAGCAAAGAGGTTGGACTCTGCAGTGTACTGCTTTCGCCTTCTTTTGCGTTTGGTGTGCACTAAACA
GTGTAAAAGCAAAGAGGCAGTTTGTTAATGAATGGGCGGCGGAGATCCCCGGAGGGCAAGAAGCTGCCTC
TGCCATCGCCGAAGAACTGGGGTATGACCTTTTGGGTCAGATTGGATCACTTGAAAATCACTATTTATTC
AAACACAAAAGCCATCCTCGGAGGTCCCGAAGAAGCGCTCTTCATATCACTAAGAGGTTATCTGATGATG
ATCGTGTGACGTGGGCTGAACAACAGTATGAAAAAGAGAGAAGTAAACGTTCAGTTCAAAAAGACTCAGC
ATTGGATCTCTTCAATGATCCAATGTGGAATCAGCAGTGGTACTTGCAAGATACCAGAATGACTGCAGCT
CTGCCCAAGCTGGACCTTCATGTAATACCTGTTTGGGAAAAGGGTATTACTGGCAAAGGAGTTGTTATTA
CTGTACTGGATGATGGCTTGGAGTGGAATCACACAGACATTTATGCCAATTATGATCCAGAGGCTAGCTA
TGATTTTAACGATAATGATCATGATCCATTTCCCCGATATGATCTCACAAATGAAAACAAACATGGAACA
AGATGTGCAGGTGAAATTGCCATGCAAGCAAATAATCACAAGTGTGGGGTTGGAGTTGCATATAATTCCA
AAGTTGGAGGCATAAGAATGCTGGATGGCATTGTAACTGATGCCATTGAGGCTAGTTCAATTGGATTCAA
CCCTGGCCATGTGGATATTTACAGTGCAAGCTGGGGCCCTAATGATGATGGAAAAACTGTGGAGGGGCCT
GGCAGACTAGCCCAGAAGGCATTTGAATATGGTGTCAAACAGGGGAGACAAGGGAAAGGCTCCATCTTTG
TCTGGGCTTCAGGGAATGGGGGTCGTCAGGGAGATAACTGTGACTGTGATGGCTACACAGACAGCATTTA
CACCATCTCTATCAGCAGTGCCTCCCAGCAAGGCCTGTCACCTTGGTATGCAGAGAAGTGTTCTTCCACA
TTGGCTACCTCCTACAGCAGTGGTGATTACACAGACCAGCGAATAACAAGCGCTGACCTGCACAATGACT
GCACAGAGACCCACACAGGCACCTCGGCTTCAGCACCCCTGGCTGCTGGTATCTTTGCTCTGGCCTTGGA
GGCAAACCCAAATCTTACCTGGAGAGATATGCAGCATCTGGTTGTCTGGACCTCTGAGTACGACCCATTG
GCCAGTAACCCAGGTTGGAAAAAGAATGGGGCAGGCTTGATGGTGAACAGCCGATTTGGATTTGGCTTGC
TAAATGCCAAAGCTCTGGTGGATTTGGCTGATCCTAGGACCTGGAGAAATGTGCCTGAGAAGAAAGAATG
TGTTGTAAAAGACAATAACTTTGAGCCTAGAGCCCTGAAAGCTAATGGAGAAGTAATTGTTGAAATCCCA
ACAAGAGCTTGTGAAGGACAAGAAAATGCTATCAAGTCTCTGGAACATGTGCAATTTGAAGCAACAATTG
AATATTCTCGTAGAGGAGACCTTCATGTCACACTCACTTCTGCTGTTGGAACCAGCACTGTACTGTTGGC
TGAAAGGGAAAGAGATACATCCCCCAATGGCTTTAAGAATTGGGACTTCATGTCTGTTCATACATGGGGA
GAGAATCCTGTAGGCACCTGGACATTGAAAATTACAGACATGTCTGGAAGAATGCAAAATGAAGGAAGGA
TTGTGAACTGGAAGTTGATTTTGCATGGGACATCTTCTCAACCAGAGCACATGAAGCAGCCTCGTGTGTA
CACATCCTACAATACAGTCCAGAATGACAGGAGAGGAGTGGAAAAGATGGTGAATGTTGTGGAGAAGCGG
CCCACACAAAAGAGCCTGAATGGCAATCTCCTGGTACCCAAAAACTCCAGCAGCAGCAATGTGGAGGGTA
GAAGGGATGAGCAGGTACAAGGAACTCCTTCAAAGGCCATGCTGCGACTCCTACAAAGTGCTTTTAGCAA
GAATGCACTTTCAAAACAATCACCAAAGAAGTCTCCAAGTGCAAAGCTCAGCATCCCTTATGAAAGTTTC
TATGAAGCCTTGGAAAAGCTCAACAAGCCCTCCAAGCTTGAAGGCTCTGAAGACAGTCTGTACAGTGACT
ATGTTGATGTATTCTATAACACAAAACCTTATAAGCATAGAGATGACAGGCTGCTGCAAGCTCTCATGGA
CATCCTAAATGAGGAGAATTAA

Translation (753 aa):
MEQRGWTLQCTAFAFFCVWCALNSVKAKRQFVNEWAAEIPGGQEAASAIAEELGYDLLGQIGSLENHYLF
KHKSHPRRSRRSALHITKRLSDDDRVTWAEQQYEKERSKRSVQKDSALDLFNDPMWNQQWYLQDTRMTAA
LPKLDLHVIPVWEKGITGKGVVITVLDDGLEWNHTDIYANYDPEASYDFNDNDHDPFPRYDLTNENKHGT
RCAGEIAMQANNHKCGVGVAYNSKVGGIRMLDGIVTDAIEASSIGFNPGHVDIYSASWGPNDDGKTVEGP
GRLAQKAFEYGVKQGRQGKGSIFVWASGNGGRQGDNCDCDGYTDSIYTISISSASQQGLSPWYAEKCSST
LATSYSSGDYTDQRITSADLHNDCTETHTGTSASAPLAAGIFALALEANPNLTWRDMQHLVVWTSEYDPL
ASNPGWKKNGAGLMVNSRFGFGLLNAKALVDLADPRTWRNVPEKKECVVKDNNFEPRALKANGEVIVEIP
TRACEGQENAIKSLEHVQFEATIEYSRRGDLHVTLTSAVGTSTVLLAERERDTSPNGFKNWDFMSVHTWG
ENPVGTWTLKITDMSGRMQNEGRIVNWKLILHGTSSQPEHMKQPRVYTSYNTVQNDRRGVEKMVNVVEKR
PTQKSLNGNLLVPKNSSSSNVEGRRDEQVQGTPSKAMLRLLQSAFSKNALSKQSPKKSPSAKLSIPYESF
YEALEKLNKPSKLEGSEDSLYSDYVDVFYNTKPYKHRDDRLLQALMDILNEEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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