NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17083.1 Public Mus musculus 2 Slc2a10 23 108 98 CCDS HistoryNCBI Gene:170441Re-query CCDS DB by CCDS ID:17083.1Re-query CCDS DB by GeneID:170441See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029196.4 ENSMUSP00000029196.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029196.4Link to Ensembl Protein Viewer:ENSMUSP00000029196.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029196Re-query CCDS DB by Protein ID:ENSMUSP00000029196
Original member Current member NCBI NM_130451.3 NP_569718.1 Accepted alive Link to Nucleotide Sequence:NM_130451.3Link to Protein Sequence:NP_569718.1Re-query CCDS DB by Nucleotide ID:NM_130451Re-query CCDS DB by Protein ID:NP_569718Link to BLAST:NP_569718.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_569718.1 536 Q8VHD6 536 100% 0 0

Chromosomal Locations for CCDS 17083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 165504045 165504048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165514426 165515697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165516233 165516355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165517617 165517752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 165518167 165518242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGGCCTTCGCCCAGCTGTCCTCCTGCTCTGTGCCTCTGTGTCTTTGCTGGGGGGCCTGACCTTCGGAT
ATGAGCTGGCCGTCATATCTGGTGCCCTCCTACCACTCCAGCTGAACTTCGGGCTGAGTTGCCTCGAACA
GGAGCTCCTGGTGGGCAGTCTGCTCTTGGGTGCTCTCCTCGCCTCCCTTGTCGGGGGCTTCCTCATTGAC
TGCTATGGCAGGAGACGAGCCATCCTAGGGAGCAATGCGGTGCTGCTGGCTGGCAGCCTGATTCTGGGTC
TGGCCAGCTCCCTGCCCTGGCTGCTCCTGGGCCGTTTATCTGTTGGCTTTGCCATCTCTCTGTCTTCCAT
GGCTTGCTGTATCTACGTGTCAGAATTGGTGGGGCCGCGGCAGAGGGGTGTGCTGGTGTCCCTCTACGAG
GTGGGCATCACTGTGGGCATTCTGTTCTCTTACGGCCTCAACTACGTCCTGGCTGGCAGCCCTTGGGGCT
GGAGGCACATGTTTGGCTGGGCAGCTGCACCTGCTCTCCTACAGTCACTCAGCCTCTTTCTTCTCCCTGC
TGGTGCAGAGGGCACAGCAGCCCCCAAAGACCTTATCCCACTCCAGGGAAGGGAGACAAGCAAACCGGGC
CTGGTGAAGCCACAGTACAGCTTTCTGGACCTCTTCAGGGCCCAGGACGGCATGTGGAGCCGGACTGTAG
TGGGGCTGGGGCTGGTGCTGTTTCAGCAGCTCACAGGACAGCCCAATGTGCTGTATTACGCCTCTACCAT
CTTTCGCTCCGTTGGCTTCCACGGGGGCTCCTCAGCTGTGCTGGCTTCTGTGGGGCTTGGCACGGTGAAG
GTGGCTGCCACCTTGGTCGCCACGGGGCTGGTGGACCGTGCAGGCCGCAGAGTCCTCCTGCTCTTTGGAT
GCGCTCTCATGGCCTTATCGGTCAGCGGCATAGGCCTGGTCAGCTTTGCTGTGTCCCTGGACTCTGGACC
CAGCTGCCTGGCCACATCCAATGCCAGCCAGCAGGTGGATCTGCCTGGAAGCTCGGGTTTGCTTGTGCGT
TCATCTCTGCCGCCAGTGCTACACACCAATGGGGACCAAGGACAGCTGGTCCTGTCAGTCACTGAGAGAC
CCATCCATCCAGTCATCACAGCATCCCTGGGACCAGTTCTGAACACTGCCTCCCCAGTTCCCACCAGTCC
CATCCTTGAGCATACCCTGCTGTGCTGGTCTGCGCTGGTTTGCATGATGGTCTACGTGAGCGCCTTCTCG
GTTGGCTTTGGACCAGTAACCTGGTTGGTCCTCAGTGAGATCTACCCAGCGGAGATCCGAGGGAGAGCCT
TCGCCTTCTGCAGCAGCTTCAACTGGGCAGCTAACCTCTTTATCAGCCTCTCCTTCCTCGACCTGATCGG
TGCCATCGGCTTGGCTTGGACCTTCCTGCTCTATGGGCTGACCGCTGTCCTTGGCCTGGCTTTCATCTAC
CTACTTGTTCCTGAAACCAAAGGACAGTCTTTAGCTGAAATAGAGCAGCAGTTTCAGACAAGCAGGTTCC
CTCTAAACTTTGGCCATAGGCAGCGCATCGGTATTCAGTACCATCGCCTGGATGTCTCCTCAGCCTCCTG
A

Translation (536 aa):
MGLRPAVLLLCASVSLLGGLTFGYELAVISGALLPLQLNFGLSCLEQELLVGSLLLGALLASLVGGFLID
CYGRRRAILGSNAVLLAGSLILGLASSLPWLLLGRLSVGFAISLSSMACCIYVSELVGPRQRGVLVSLYE
VGITVGILFSYGLNYVLAGSPWGWRHMFGWAAAPALLQSLSLFLLPAGAEGTAAPKDLIPLQGRETSKPG
LVKPQYSFLDLFRAQDGMWSRTVVGLGLVLFQQLTGQPNVLYYASTIFRSVGFHGGSSAVLASVGLGTVK
VAATLVATGLVDRAGRRVLLLFGCALMALSVSGIGLVSFAVSLDSGPSCLATSNASQQVDLPGSSGLLVR
SSLPPVLHTNGDQGQLVLSVTERPIHPVITASLGPVLNTASPVPTSPILEHTLLCWSALVCMMVYVSAFS
VGFGPVTWLVLSEIYPAEIRGRAFAFCSSFNWAANLFISLSFLDLIGAIGLAWTFLLYGLTAVLGLAFIY
LLVPETKGQSLAEIEQQFQTSRFPLNFGHRQRIGIQYHRLDVSSAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH