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Report for CCDS24653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24653.1 Public Mus musculus 11 Phykpl 23 108 98 CCDS HistoryNCBI Gene:72947Re-query CCDS DB by CCDS ID:24653.1Re-query CCDS DB by GeneID:72947See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167797.7 ENSMUSP00000132190.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167797.7Link to Ensembl Protein Viewer:ENSMUSP00000132190.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167797Re-query CCDS DB by Protein ID:ENSMUSP00000132190
Original member NCBI NM_028398.2 NP_082674.1 Updated not alive Link to Nucleotide Sequence:NM_028398.2Link to Protein Sequence:NP_082674.1Re-query CCDS DB by Nucleotide ID:NM_028398Re-query CCDS DB by Protein ID:NP_082674
Current member NCBI NM_028398.3 NP_082674.1 Accepted alive Link to Nucleotide Sequence:NM_028398.3Link to Protein Sequence:NP_082674.1Re-query CCDS DB by Nucleotide ID:NM_028398Re-query CCDS DB by Protein ID:NP_082674Link to BLAST:NP_082674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082674.1 467 Q8R1K4-1 467 100% 0 0

Chromosomal Locations for CCDS 24653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 51584821 51584879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51585514 51585632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51586561 51586720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51591399 51591473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51592006 51592093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51592169 51592285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51593604 51593686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51593916 51594141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51598276 51598430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51598651 51598740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51599466 51599596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51600569 51600622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 51602795 51602841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGCCGCGGACACGCGCGCCAAGGCCGTCACTCTGGACCTGAGACGTCGGCTGCTCAGCTCTTCCTGCA
GACTCTTTTTTCCTGAGGATCCTGTTAAGATTATCCGAGGCCAAGGGCAGTACCTGTACGATGAGCAAGG
GCGAGAGTACCTGGACTGTATCAACAACGTGGCTCATGTTGGGCACTGCCACCCTACCGTGGTCCAAGCC
GCACATGAACAGAACCTAGTGCTCAACACCAACAGCCGCTACCTGCATGACAACATCGTGGACTATGCCC
AGAGGCTGTCGGAGACCCTGCCGGAGCAGCTCTCTGTGTTTTACTTCTTGAATTCTGGGTCAGAAGCCAA
CGACCTGGCCTTGAGACTAGCTCGACAGTACACGGGACACCAGGATGTGGTGGTATTAGACCATGCTTAT
CATGGTCACCTGAGCTCCCTGATCGACATCAGTCCCTACAAGTTCCGGAATCTGGGTGGCCAGAAGGAAT
GGGTCCATGTGGCTCCTCTCCCAGACACCTACCGGGGCCCTTACAGGGAGGACCACCCCAACCCAGCAGA
GGCCTATGCCAACGAGGTGAAGCACGTCATCAGCAGTGCACAGCAGAAGGGCAGGAAGATCGCAGCCTTC
TTCGCTGAGTCTCTGCCCAGTGTGAGTGGACAGATCATTCCTCCTGCTGGCTACTTCTCCCAGGTGGCTG
AGCACATCCACAGAGCCGGAGGGCTCTTTGTGGCAGATGAGATCCAGGTTGGTTTTGGCCGCATAGGCAA
GCACTTTTGGGCCTTCCAGCTGGAGGGAGAAGACTTTGTTCCCGACATTGTCACCATGGGCAAGTCCATC
GGCAATGGTCACCCTGTTGCCTGCATGGCCACTACCCAAGCTGTGTCAAGGGCATTTGAAGCTACCGGTG
TAGAATACTTCAACACGTTTGGTGGCAACCCCGTATCCTGTGCTGTGGGGCTAGCAGTCCTAGATGTCTT
GAAAACAGAACAGCTCCAGGCTCACGCCACTAATGTGGGCAGTTTCCTTCTGGAGCACCTCACCCAGCAG
AAAGCCAAGCACCCTATCATTGGAGATGTCAGGGGCACTGGACTCTTCATCGGTGTGGATCTCATCAAAG
ATGAGACCCTGAGGACACCAGCAACTGAAGAGGCGGAATATTTGGTCTCCAGGCTAAAGGAAAACTACAT
TTTACTGAGCATTGATGGCCCTGGAAAGAATATTCTGAAGTTCAAGCCCCCAATGTGCTTCAACGTTGAC
AATGCACAACATGTGGTAGCAAAGCTGGATGACATTCTAACAGACATGGAAGAAAAAGTAAGAAGTTGTG
AAACCCTGAGGATCAAGCACCCCCCAGAAGATACTCATCCTACTCAAATACTCCTAACAAGACAGCAAGA
TTGA

Translation (467 aa):
MAADTRAKAVTLDLRRRLLSSSCRLFFPEDPVKIIRGQGQYLYDEQGREYLDCINNVAHVGHCHPTVVQA
AHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEQLSVFYFLNSGSEANDLALRLARQYTGHQDVVVLDHAY
HGHLSSLIDISPYKFRNLGGQKEWVHVAPLPDTYRGPYREDHPNPAEAYANEVKHVISSAQQKGRKIAAF
FAESLPSVSGQIIPPAGYFSQVAEHIHRAGGLFVADEIQVGFGRIGKHFWAFQLEGEDFVPDIVTMGKSI
GNGHPVACMATTQAVSRAFEATGVEYFNTFGGNPVSCAVGLAVLDVLKTEQLQAHATNVGSFLLEHLTQQ
KAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEEAEYLVSRLKENYILLSIDGPGKNILKFKPPMCFNVD
NAQHVVAKLDDILTDMEEKVRSCETLRIKHPPEDTHPTQILLTRQQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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