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Report for CCDS33843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33843.1 Public Homo sapiens 3 SLC41A3 24 110 108 CCDS HistoryNCBI Gene:54946Re-query CCDS DB by CCDS ID:33843.1Re-query CCDS DB by GeneID:54946See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33843.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315891.10 ENSP00000326070.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000315891.10Link to Ensembl Protein Viewer:ENSP00000326070.6Re-query CCDS DB by Nucleotide ID:ENST00000315891Re-query CCDS DB by Protein ID:ENSP00000326070
Original member Current member NCBI NM_001008485.2 NP_001008485.2 Accepted alive Link to Nucleotide Sequence:NM_001008485.2Link to Protein Sequence:NP_001008485.2Re-query CCDS DB by Nucleotide ID:NM_001008485Re-query CCDS DB by Protein ID:NP_001008485Link to BLAST:NP_001008485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008485.2 507 Q96GZ6-1 507 100% 0 0

Chromosomal Locations for CCDS 33843.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126006407 126006564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126007114 126007225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126008732 126008880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126012615 126012749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126015494 126015573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126016731 126016875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126022786 126022932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126026335 126026479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126033607 126033678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126050943 126051050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126067947 126068219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGATGGGACAGAGACCCGGCAGCGGAGGCTGGACAGCTGTGGCAAGCCAGGGGAGCTGGGGCTTCCTC
ACCCCCTCAGCACAGGAGGACTCCCTGTAGCCTCAGAAGATGGAGCTCTCAGGGCCCCTGAGAGCCAAAG
CGTGACCCCCAAGCCACTGGAGACTGAGCCTAGCAGGGAGACCACCTGGTCCATAGGCCTTCAGGTGACC
GTGCCCTTCATGTTTGCAGGCCTGGGACTGTCCTGGGCCGGCATGCTTCTGGACTATTTCCAGCACTGGC
CTGTGTTTGTGGAGGTGAAAGACCTTTTGACATTGGTGCCGCCCCTGGTGGGCCTGAAGGGGAACCTGGA
GATGACACTGGCATCCAGACTCTCCACAGCTGCCAACACTGGACAAATTGATGACCCCCAGGAGCAGCAC
AGAGTCATCAGCAGCAACCTGGCCCTCATCCAGGTGCAGGCCACTGTCGTGGGGCTCTTGGCTGCTGTGG
CTGCGCTGCTGTTGGGCGTGGTGTCTCGAGAGGAAGTGGATGTCGCCAAGGTGGAGTTGCTGTGTGCCAG
CAGTGTCCTCACTGCCTTCCTTGCAGCCTTTGCCCTGGGGGTGCTGATGGTCTGTATAGTGATTGGTGCT
CGAAAGCTCGGGGTCAACCCAGACAACATTGCCACGCCCATTGCAGCCAGCCTGGGAGACCTCATCACAC
TGTCCATTCTGGCTTTGGTTAGCAGCTTCTTCTACAGACACAAAGATAGTCGGTATCTGACGCCGCTGGT
CTGCCTCAGCTTTGCGGCTCTGACCCCAGTGTGGGTCCTCATTGCCAAGCAGAGCCCACCCATCGTGAAG
ATCCTGAAGTTTGGCTGGTTCCCAATCATCCTGGCCATGGTCATCAGCAGTTTCGGAGGACTCATCTTGA
GCAAAACCGTTTCTAAACAGCAGTACAAAGGCATGGCGATATTTACCCCCGTCATATGTGGTGTTGGTGG
CAATCTGGTGGCCATTCAGACCAGCCGAATCTCAACCTACCTGCACATGTGGAGTGCACCTGGCGTCCTG
CCCCTCCAGATGAAGAAATTCTGGCCCAACCCGTGTTCTACTTTCTGCACGTCAGAAATCAATTCCATGT
CAGCTCGAGTCCTGCTCTTGCTGGTGGTCCCAGGCCATCTGATTTTCTTCTACATCATCTACCTGGTGGA
GGGTCAGTCAGTCATAAACAGCCAGACCTTTGTGGTGCTCTACCTGCTGGCAGGCCTGATCCAGGTGACA
ATCCTGCTGTACCTCGCAGAAGTGATGGTTCGGCTGACTTGGCACCAGGCCCTGGATCCTGACAACCACT
GCATCCCCTACCTTACAGGGCTGGGGGACCTGCTCGGTTCAAGCTCCGTGGGCCACACTGCTGCTGTGCC
AAGAAGGTGTACAGCCTCCCCAGGATGGGGCCTCATACAACCCTTCATCTGCACTCAACATTTAATCGTG
TCCTTGCTGTCTTTTTATTTTCCTTTTTGTTTGTTAGCAAAAACCTCTATTTAG

Translation (507 aa):
MDGTETRQRRLDSCGKPGELGLPHPLSTGGLPVASEDGALRAPESQSVTPKPLETEPSRETTWSIGLQVT
VPFMFAGLGLSWAGMLLDYFQHWPVFVEVKDLLTLVPPLVGLKGNLEMTLASRLSTAANTGQIDDPQEQH
RVISSNLALIQVQATVVGLLAAVAALLLGVVSREEVDVAKVELLCASSVLTAFLAAFALGVLMVCIVIGA
RKLGVNPDNIATPIAASLGDLITLSILALVSSFFYRHKDSRYLTPLVCLSFAALTPVWVLIAKQSPPIVK
ILKFGWFPIILAMVISSFGGLILSKTVSKQQYKGMAIFTPVICGVGGNLVAIQTSRISTYLHMWSAPGVL
PLQMKKFWPNPCSTFCTSEINSMSARVLLLLVVPGHLIFFYIIYLVEGQSVINSQTFVVLYLLAGLIQVT
ILLYLAEVMVRLTWHQALDPDNHCIPYLTGLGDLLGSSSVGHTAAVPRRCTASPGWGLIQPFICTQHLIV
SLLSFYFPFCLLAKTSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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