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Report for CCDS41309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41309.1 Public Homo sapiens 1 CAP1 24 110 108 CCDS HistoryNCBI Gene:10487Re-query CCDS DB by CCDS ID:41309.1Re-query CCDS DB by GeneID:10487See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41309.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372792.7 ENSP00000361878.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372792.7Link to Ensembl Protein Viewer:ENSP00000361878.2Re-query CCDS DB by Nucleotide ID:ENST00000372792Re-query CCDS DB by Protein ID:ENSP00000361878
Original member Current member EBI ENST00000372797.7 ENSP00000361883.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372797.7Link to Ensembl Protein Viewer:ENSP00000361883.3Re-query CCDS DB by Nucleotide ID:ENST00000372797Re-query CCDS DB by Protein ID:ENSP00000361883
Original member Current member EBI ENST00000372805.8 ENSP00000361891.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372805.8Link to Ensembl Protein Viewer:ENSP00000361891.3Re-query CCDS DB by Nucleotide ID:ENST00000372805Re-query CCDS DB by Protein ID:ENSP00000361891
Original member Current member NCBI NM_001105530.2 NP_001099000.2 Accepted alive Link to Nucleotide Sequence:NM_001105530.2Link to Protein Sequence:NP_001099000.2Re-query CCDS DB by Nucleotide ID:NM_001105530Re-query CCDS DB by Protein ID:NP_001099000Link to BLAST:NP_001099000.2
Original member Current member NCBI NM_001350475.2 NP_001337404.2 Accepted alive Link to Nucleotide Sequence:NM_001350475.2Link to Protein Sequence:NP_001337404.2Re-query CCDS DB by Nucleotide ID:NM_001350475Re-query CCDS DB by Protein ID:NP_001337404Link to BLAST:NP_001337404.2
Original member Current member NCBI NM_001350476.2 NP_001337405.2 Accepted alive Link to Nucleotide Sequence:NM_001350476.2Link to Protein Sequence:NP_001337405.2Re-query CCDS DB by Nucleotide ID:NM_001350476Re-query CCDS DB by Protein ID:NP_001337405Link to BLAST:NP_001337405.2
Original member Current member NCBI NM_001350477.3 NP_001337406.2 Accepted alive Link to Nucleotide Sequence:NM_001350477.3Link to Protein Sequence:NP_001337406.2Re-query CCDS DB by Nucleotide ID:NM_001350477Re-query CCDS DB by Protein ID:NP_001337406Link to BLAST:NP_001337406.2
Original member Current member NCBI NM_001350478.2 NP_001337407.2 Accepted alive Link to Nucleotide Sequence:NM_001350478.2Link to Protein Sequence:NP_001337407.2Re-query CCDS DB by Nucleotide ID:NM_001350478Re-query CCDS DB by Protein ID:NP_001337407Link to BLAST:NP_001337407.2
Original member Current member NCBI NM_001350479.2 NP_001337408.2 Accepted alive Link to Nucleotide Sequence:NM_001350479.2Link to Protein Sequence:NP_001337408.2Re-query CCDS DB by Nucleotide ID:NM_001350479Re-query CCDS DB by Protein ID:NP_001337408Link to BLAST:NP_001337408.2
Original member Current member NCBI NM_001350480.2 NP_001337409.2 Accepted alive Link to Nucleotide Sequence:NM_001350480.2Link to Protein Sequence:NP_001337409.2Re-query CCDS DB by Nucleotide ID:NM_001350480Re-query CCDS DB by Protein ID:NP_001337409Link to BLAST:NP_001337409.2
Original member Current member NCBI NM_001350481.2 NP_001337410.2 Accepted alive Link to Nucleotide Sequence:NM_001350481.2Link to Protein Sequence:NP_001337410.2Re-query CCDS DB by Nucleotide ID:NM_001350481Re-query CCDS DB by Protein ID:NP_001337410Link to BLAST:NP_001337410.2
Original member Current member NCBI NM_006367.4 NP_006358.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006367.4Link to Protein Sequence:NP_006358.2Re-query CCDS DB by Nucleotide ID:NM_006367Re-query CCDS DB by Protein ID:NP_006358Link to BLAST:NP_006358.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099000.2 475 Q01518-1 475 100% 0 0
NP_001337404.2 475 Q01518-1 475 100% 0 0
NP_001337405.2 475 Q01518-1 475 100% 0 0
NP_001337406.2 475 Q01518-1 475 100% 0 0
NP_001337407.2 475 Q01518-1 475 100% 0 0
NP_001337408.2 475 Q01518-1 475 100% 0 0
NP_001337409.2 475 Q01518-1 475 100% 0 0
NP_001337410.2 475 Q01518-1 475 100% 0 0
NP_006358.2 475 Q01518-1 475 100% 0 0

Chromosomal Locations for CCDS 41309.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40059347 40059458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40060067 40060170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40061735 40061812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40064227 40064370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40064474 40064559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40066215 40066320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40067540 40067717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40069690 40069874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40070159 40070282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40070430 40070512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40070836 40070979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40071450 40071533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCTGACATGCAAAATCTGGTAGAAAGATTGGAGAGGGCAGTGGGCCGCCTGGAGGCAGTATCTCATA
CCTCTGACATGCACCGTGGGTATGCAGACAGTCCTTCAAAAGCAGGAGCAGCTCCATATGTGCAGGCATT
TGACTCGCTGCTTGCTGGTCCTGTGGCAGAGTACTTGAAGATCAGTAAAGAGATTGGGGGAGACGTGCAG
AAACATGCGGAGATGGTCCACACAGGTTTGAAGTTGGAGCGAGCTCTGTTGGTTACAGCTTCTCAGTGTC
AACAGCCAGCAGAAAATAAGCTTTCCGATTTGTTGGCACCCATCTCAGAGCAGATCAAAGAAGTGATAAC
CTTTCGGGAGAAGAACCGAGGCAGCAAGTTGTTTAATCACCTGTCAGCTGTCAGCGAAAGTATCCAGGCC
CTGGGCTGGGTGGCTATGGCTCCCAAGCCTGGCCCTTATGTGAAAGAAATGAATGATGCCGCCATGTTTT
ATACAAACCGAGTCCTCAAAGAGTACAAAGATGTGGATAAGAAGCATGTAGACTGGGTCAAAGCTTATTT
AAGTATATGGACAGAGCTGCAGGCTTACATTAAGGAGTTCCATACCACCGGACTGGCCTGGAGCAAAACG
GGGCCTGTGGCAAAAGAACTGAGCGGACTGCCATCTGGACCCTCTGCCGGATCATGTCCTCCTCCCCCTC
CACCATGCCCCCCTCCTCCCCCAGTCTCTACCATTTCATGCTCATATGAGTCTGCTTCCCGCTCATCACT
GTTCGCGCAGATTAATCAGGGGGAGAGCATTACACATGCCCTGAAACATGTATCTGATGACATGAAGACT
CACAAGAACCCTGCCCTGAAGGCTCAGAGTGGTCCAGTACGCAGTGGCCCCAAACCATTCTCTGCACCTA
AACCCCAAACCAGCCCATCCCCCAAACGAGCCACAAAGAAGGAGCCAGCTGTACTTGAACTGGAGGGCAA
GAAGTGGAGAGTGGAAAATCAGGAAAATGTTTCCAACCTGGTGATTGAGGACACAGAGCTGAAACAGGTG
GCTTACATATACAAGTGTGTCAACACGACATTGCAAATCAAGGGCAAAATTAACTCCATTACAGTAGATA
ACTGTAAGAAACTTGGCCTGGTATTCGATGACGTGGTGGGCATTGTGGAGATAATCAACAGTAAGGATGT
CAAAGTTCAGGTAATGGGTAAAGTGCCAACCATATCCATCAACAAAACAGATGGCTGCCATGCTTACCTG
AGCAAGAATTCCCTGGATTGTGAAATAGTCAGTGCCAAATCTTCCGAGATGAATGTCCTCATTCCTACAG
AAGGCGGTGACTTTAATGAATTCCCAGTTCCTGAGCAGTTCAAGACCCTATGGAACGGGCAGAAGTTGGT
CACCACAGTGACAGAAATTGCTGGATAA

Translation (475 aa):
MADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAFDSLLAGPVAEYLKISKEIGGDVQ
KHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAPISEQIKEVITFREKNRGSKLFNHLSAVSESIQA
LGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHTTGLAWSKT
GPVAKELSGLPSGPSAGSCPPPPPPCPPPPPVSTISCSYESASRSSLFAQINQGESITHALKHVSDDMKT
HKNPALKAQSGPVRSGPKPFSAPKPQTSPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQV
AYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYL
SKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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