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Report for CCDS11377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11377.1 Public Homo sapiens 17 KRT10 24 110 108 CCDS HistoryNCBI Gene:3858Re-query CCDS DB by CCDS ID:11377.1Re-query CCDS DB by GeneID:3858See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11377.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269576.6 ENSP00000269576.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269576.6Link to Ensembl Protein Viewer:ENSP00000269576.5Re-query CCDS DB by Nucleotide ID:ENST00000269576Re-query CCDS DB by Protein ID:ENSP00000269576
Original member Current member NCBI NM_000421.5 NP_000412.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000421.5Link to Protein Sequence:NP_000412.4Re-query CCDS DB by Nucleotide ID:NM_000421Re-query CCDS DB by Protein ID:NP_000412Link to BLAST:NP_000412.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000412.4 584 P13645 584 100% 0 0

Chromosomal Locations for CCDS 11377.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40818476 40818482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40818787 40819161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40819517 40819734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40820049 40820174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40820262 40820423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40820511 40820667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40821035 40821117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40821959 40822585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGTCTGTTCGATACAGCTCAAGCAAGCACTACTCTTCCTCCCGCAGTGGAGGAGGAGGAGGAGGAGGAG
GATGTGGAGGAGGAGGAGGAGTGTCATCCCTAAGAATTTCTAGCAGCAAAGGCTCCCTTGGTGGAGGATT
TAGCTCAGGGGGGTTCAGTGGTGGCTCTTTTAGCCGTGGGAGCTCTGGTGGGGGCTGCTTTGGGGGCTCA
TCAGGTGGCTATGGAGGATTAGGAGGTTTTGGTGGAGGTAGCTTTCGTGGAAGCTATGGAAGTAGCAGCT
TTGGTGGGAGTTATGGAGGCATCTTTGGAGGGGGCAGTTTCGGAGGTGGCAGCTTTGGTGGGGGCAGCTT
TGGTGGAGGCGGCTTTGGTGGAGGCGGCTTTGGAGGAGGCTTTGGTGGTGGATTTGGAGGAGATGGTGGC
CTTCTCTCTGGAAATGAAAAAGTAACCATGCAGAATCTGAATGACCGCCTGGCTTCCTACTTGGACAAAG
TTCGGGCTCTGGAAGAATCAAACTATGAGCTGGAAGGCAAAATCAAGGAGTGGTATGAAAAGCATGGCAA
CTCACATCAGGGGGAGCCTCGTGACTACAGCAAATACTACAAAACCATCGATGACCTTAAAAATCAGATT
CTCAACCTAACAACTGATAATGCCAACATCCTGCTTCAGATCGACAATGCCAGGCTGGCAGCTGATGACT
TCAGGCTGAAGTATGAGAATGAGGTAGCTCTGCGCCAGAGCGTGGAGGCTGACATCAACGGCCTGCGTAG
GGTGCTGGATGAGCTGACCCTGACCAAGGCTGACCTGGAGATGCAAATTGAGAGCCTGACTGAAGAGCTG
GCCTATCTGAAGAAGAACCACGAGGAGGAAATGAAAGACCTTCGAAATGTGTCCACTGGTGATGTGAATG
TGGAAATGAATGCTGCCCCGGGTGTTGATCTGACTCAACTTCTGAATAACATGAGAAGCCAATATGAACA
ACTTGCTGAACAAAACCGCAAAGATGCTGAAGCCTGGTTCAATGAAAAGAGCAAGGAACTGACTACAGAA
ATTGATAATAACATTGAACAGATATCCAGCTATAAATCTGAGATTACTGAATTGAGACGTAATGTACAAG
CTCTGGAGATAGAACTACAGTCCCAACTGGCCTTGAAACAATCCCTGGAAGCCTCCTTGGCAGAAACAGA
AGGTCGCTACTGTGTGCAGCTCTCACAGATTCAGGCCCAGATATCCGCTCTGGAAGAACAGTTGCAACAG
ATTCGAGCTGAAACCGAGTGCCAGAATACTGAATACCAACAACTCCTGGATATTAAGATCCGACTGGAGA
ATGAAATTCAAACCTACCGCAGCCTGCTAGAAGGAGAGGGAAGTTCCGGAGGCGGCGGACGCGGCGGCGG
AAGTTTCGGCGGCGGCTACGGCGGCGGAAGCTCCGGCGGCGGAAGCTCCGGCGGCGGCCACGGCGGCGGC
CACGGCGGCAGTTCCGGCGGCGGCTACGGAGGCGGAAGCTCCGGCGGCGGAAGCTCCGGCGGCGGCTACG
GGGGCGGAAGCTCCAGCGGCGGCCACGGCGGCAGTTCCAGCGGCGGCTACGGTGGTGGCAGTTCCGGCGG
CGGCGGCGGCGGCTACGGGGGCGGCAGCTCCGGCGGCGGCAGCAGCTCCGGCGGCGGATACGGCGGCGGC
AGCTCCAGCGGAGGCCACAAGTCCTCCTCTTCCGGGTCCGTGGGCGAGTCTTCATCTAAGGGACCAAGAT
ACTAA

Translation (584 aa):
MSVRYSSSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGS
SGGYGGLGGFGGGSFRGSYGSSSFGGSYGGIFGGGSFGGGSFGGGSFGGGGFGGGGFGGGFGGGFGGDGG
LLSGNEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEWYEKHGNSHQGEPRDYSKYYKTIDDLKNQI
LNLTTDNANILLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTLTKADLEMQIESLTEEL
AYLKKNHEEEMKDLRNVSTGDVNVEMNAAPGVDLTQLLNNMRSQYEQLAEQNRKDAEAWFNEKSKELTTE
IDNNIEQISSYKSEITELRRNVQALEIELQSQLALKQSLEASLAETEGRYCVQLSQIQAQISALEEQLQQ
IRAETECQNTEYQQLLDIKIRLENEIQTYRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGG
HGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGG
SSSGGHKSSSSGSVGESSSKGPRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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