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Report for CCDS33300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33300.1 Public Homo sapiens 2 GTDC1 24 110 108 CCDS HistoryNCBI Gene:79712Re-query CCDS DB by CCDS ID:33300.1Re-query CCDS DB by GeneID:79712See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344850.8 ENSP00000339750.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344850.8Link to Ensembl Protein Viewer:ENSP00000339750.4Re-query CCDS DB by Nucleotide ID:ENST00000344850Re-query CCDS DB by Protein ID:ENSP00000339750
Original member Current member EBI ENST00000392869.6 ENSP00000376608.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392869.6Link to Ensembl Protein Viewer:ENSP00000376608.1Re-query CCDS DB by Nucleotide ID:ENST00000392869Re-query CCDS DB by Protein ID:ENSP00000376608
Original member Current member EBI ENST00000409214.5 ENSP00000386581.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409214.5Link to Ensembl Protein Viewer:ENSP00000386581.1Re-query CCDS DB by Nucleotide ID:ENST00000409214Re-query CCDS DB by Protein ID:ENSP00000386581
Original member Current member EBI ENST00000542155.5 ENSP00000438323.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542155.5Link to Ensembl Protein Viewer:ENSP00000438323.1Re-query CCDS DB by Nucleotide ID:ENST00000542155Re-query CCDS DB by Protein ID:ENSP00000438323
Original member Current member EBI ENST00000682281.1 ENSP00000507713.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682281.1Link to Ensembl Protein Viewer:ENSP00000507713.1Re-query CCDS DB by Nucleotide ID:ENST00000682281Re-query CCDS DB by Protein ID:ENSP00000507713
Original member Current member NCBI NM_001006636.5 NP_001006637.1 Accepted alive Link to Nucleotide Sequence:NM_001006636.5Link to Protein Sequence:NP_001006637.1Re-query CCDS DB by Nucleotide ID:NM_001006636Re-query CCDS DB by Protein ID:NP_001006637Link to BLAST:NP_001006637.1
Original member Current member NCBI NM_001164629.5 NP_001158101.1 Accepted alive Link to Nucleotide Sequence:NM_001164629.5Link to Protein Sequence:NP_001158101.1Re-query CCDS DB by Nucleotide ID:NM_001164629Re-query CCDS DB by Protein ID:NP_001158101Link to BLAST:NP_001158101.1
Original member Current member NCBI NM_001354354.2 NP_001341283.1 Accepted alive Link to Nucleotide Sequence:NM_001354354.2Link to Protein Sequence:NP_001341283.1Re-query CCDS DB by Nucleotide ID:NM_001354354Re-query CCDS DB by Protein ID:NP_001341283Link to BLAST:NP_001341283.1
Original member Current member NCBI NM_001354361.1 NP_001341290.1 Accepted alive Link to Nucleotide Sequence:NM_001354361.1Link to Protein Sequence:NP_001341290.1Re-query CCDS DB by Nucleotide ID:NM_001354361Re-query CCDS DB by Protein ID:NP_001341290Link to BLAST:NP_001341290.1
Original member Current member NCBI NM_001376307.2 NP_001363236.1 Accepted alive Link to Nucleotide Sequence:NM_001376307.2Link to Protein Sequence:NP_001363236.1Re-query CCDS DB by Nucleotide ID:NM_001376307Re-query CCDS DB by Protein ID:NP_001363236Link to BLAST:NP_001363236.1
Original member Current member NCBI NM_001376308.2 NP_001363237.1 Accepted alive Link to Nucleotide Sequence:NM_001376308.2Link to Protein Sequence:NP_001363237.1Re-query CCDS DB by Nucleotide ID:NM_001376308Re-query CCDS DB by Protein ID:NP_001363237Link to BLAST:NP_001363237.1
Original member Current member NCBI NM_001376309.2 NP_001363238.1 Accepted alive Link to Nucleotide Sequence:NM_001376309.2Link to Protein Sequence:NP_001363238.1Re-query CCDS DB by Nucleotide ID:NM_001376309Re-query CCDS DB by Protein ID:NP_001363238Link to BLAST:NP_001363238.1
Original member Current member NCBI NM_001376310.2 NP_001363239.1 Accepted alive Link to Nucleotide Sequence:NM_001376310.2Link to Protein Sequence:NP_001363239.1Re-query CCDS DB by Nucleotide ID:NM_001376310Re-query CCDS DB by Protein ID:NP_001363239Link to BLAST:NP_001363239.1
Original member Current member NCBI NM_001376311.2 NP_001363240.1 Accepted alive Link to Nucleotide Sequence:NM_001376311.2Link to Protein Sequence:NP_001363240.1Re-query CCDS DB by Nucleotide ID:NM_001376311Re-query CCDS DB by Protein ID:NP_001363240Link to BLAST:NP_001363240.1
Original member Current member NCBI NM_001376312.2 NP_001363241.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376312.2Link to Protein Sequence:NP_001363241.1Re-query CCDS DB by Nucleotide ID:NM_001376312Re-query CCDS DB by Protein ID:NP_001363241Link to BLAST:NP_001363241.1
Original member Current member NCBI NM_001376313.2 NP_001363242.1 Accepted alive Link to Nucleotide Sequence:NM_001376313.2Link to Protein Sequence:NP_001363242.1Re-query CCDS DB by Nucleotide ID:NM_001376313Re-query CCDS DB by Protein ID:NP_001363242Link to BLAST:NP_001363242.1
Original member Current member NCBI NM_001376314.2 NP_001363243.1 Accepted alive Link to Nucleotide Sequence:NM_001376314.2Link to Protein Sequence:NP_001363243.1Re-query CCDS DB by Nucleotide ID:NM_001376314Re-query CCDS DB by Protein ID:NP_001363243Link to BLAST:NP_001363243.1
Original member Current member NCBI NM_001376315.2 NP_001363244.1 Accepted alive Link to Nucleotide Sequence:NM_001376315.2Link to Protein Sequence:NP_001363244.1Re-query CCDS DB by Nucleotide ID:NM_001376315Re-query CCDS DB by Protein ID:NP_001363244Link to BLAST:NP_001363244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006637.1 458 Q4AE62-1 458 100% 0 0
NP_001158101.1 458 Q4AE62-1 458 100% 0 0
NP_001341283.1 458 Q4AE62-1 458 100% 0 0
NP_001341290.1 458 Q4AE62-1 458 100% 0 0
NP_001363236.1 458 Q4AE62-1 458 100% 0 0
NP_001363237.1 458 Q4AE62-1 458 100% 0 0
NP_001363238.1 458 Q4AE62-1 458 100% 0 0
NP_001363239.1 458 Q4AE62-1 458 100% 0 0
NP_001363240.1 458 Q4AE62-1 458 100% 0 0
NP_001363241.1 458 Q4AE62-1 458 100% 0 0
NP_001363242.1 458 Q4AE62-1 458 100% 0 0
NP_001363243.1 458 Q4AE62-1 458 100% 0 0
NP_001363244.1 458 Q4AE62-1 458 100% 0 0

Chromosomal Locations for CCDS 33300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143947052 143947135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143951982 143952073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143952773 143952843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143957195 143957339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143970653 143970762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144007182 144007535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144141882 144142055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144145572 144145739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144208603 144208781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGAGTATCCTCATCATTGAAGCATTCTATGGAGGCTCCCATAAACAGCTGGTGGATCTTCTTCAAGAAG
AGTTAGGAGACTGTGTCGTTTATACCCTTCCTGCAAAGAAATGGCATTGGAGAGCCCGGACATCTGCTTT
ATATTTCTCTCAGACCATTCCCATCAGTGAGCATTACAGGACCCTCTTTGCAAGTTCAGTGCTTAACCTG
ACCGAACTGGCTGCCCTTCGGCCTGACCTTGGGAAACTGAAAAAGATTCTGTATTTTCACGAGAACCAGT
TGATATATCCTGTCAAGAAATGTCAGGAGAGGGATTTCCAATATGGATACAACCAAATTCTTTCATGCCT
GGTGGCTGATGTGGTTGTATTCAACTCAGTTTTTAATATGGAATCATTTCTCACTTCCATGGGAAAATTT
ATGAAGCTGATTCCTGATCACAGACCCAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTT
ACTTTCCCATCAGGTTTCCTGATGTGAGCAGATTCATGCCCAAGCACAAAACAACCCATTTAAAGAAGAT
GCTCGGCCTTAAAGGAAATGGCGGTGCGGTTCTGTCCATGGCCCTTCCTTTTCAGCCAGAGCAGAGAGAT
TCAGAGGATTTATTGAAGAATTTTAATTCAGAGTGTGATACACACTGTGGCCTTGATACTGCACGACAAG
AATATTTGGGTAACTCATTAAGACAGGAATCAGACTTGAAAAAATCCACCTCGTCAGATAATTCAAGCTC
TCATCATGGTGAAAATAAACAAAATCTGACTGTTGATCCCTGTGACATTTTGGGTGGAGTTGATAATCAG
CAAAGACTGCTACACATTGTCTGGCCTCACAGGTGGGAGCATGATAAAGATCCAGAAAGCTTTTTTAAGG
TATTAATGCATCTTAAAGACTTAGGACTCAATTTCCACGTGTCTGTACTTGGAGAAACCTTCACAGATGT
CCCAGATATTTTTTCAGAGGCCAAAAAGGCATTGGGATCTTCTGTCTTACACTGGGGCTACTTACCCAGC
AAAGATGACTATTTCCAAGTACTGTGCATGGCTGATGTTGTCATCTCAACAGCTAAGCATGAATTCTTTG
GAGTGGCAATGTTGGAAGCTGTGTACTGTGGGTGTTACCCACTTTGTCCTAAAGATTTGGTTTATCCCGA
AATATTTCCAGCTGAATATCTGTATTCTACACCTGAACAGCTTTCAAAAAGGCTCCAGAATTTCTGCAAG
AGACCAGATATTATAAGAAAACATCTCTATAAGGGTGAAATCGCTCCGTTTTCTTGGGCAGCCCTACATG
GTAAATTCAGGTCTCTGCTTACAACAGAACCTAGGGAAGATTTGTGA

Translation (458 aa):
MSILIIEAFYGGSHKQLVDLLQEELGDCVVYTLPAKKWHWRARTSALYFSQTIPISEHYRTLFASSVLNL
TELAALRPDLGKLKKILYFHENQLIYPVKKCQERDFQYGYNQILSCLVADVVVFNSVFNMESFLTSMGKF
MKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMPKHKTTHLKKMLGLKGNGGAVLSMALPFQPEQRD
SEDLLKNFNSECDTHCGLDTARQEYLGNSLRQESDLKKSTSSDNSSSHHGENKQNLTVDPCDILGGVDNQ
QRLLHIVWPHRWEHDKDPESFFKVLMHLKDLGLNFHVSVLGETFTDVPDIFSEAKKALGSSVLHWGYLPS
KDDYFQVLCMADVVISTAKHEFFGVAMLEAVYCGCYPLCPKDLVYPEIFPAEYLYSTPEQLSKRLQNFCK
RPDIIRKHLYKGEIAPFSWAALHGKFRSLLTTEPREDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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