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Report for CCDS45697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45697.1 Public Homo sapiens 17 ATXN7L3 24 110 108 CCDS HistoryNCBI Gene:56970Re-query CCDS DB by CCDS ID:45697.1Re-query CCDS DB by GeneID:56970See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45697.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454077.6 ENSP00000397259.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454077.6Link to Ensembl Protein Viewer:ENSP00000397259.1Re-query CCDS DB by Nucleotide ID:ENST00000454077Re-query CCDS DB by Protein ID:ENSP00000397259
Original member Current member NCBI NM_001382308.1 NP_001369237.1 Accepted alive Link to Nucleotide Sequence:NM_001382308.1Link to Protein Sequence:NP_001369237.1Re-query CCDS DB by Nucleotide ID:NM_001382308Re-query CCDS DB by Protein ID:NP_001369237Link to BLAST:NP_001369237.1
Original member Current member NCBI NM_001382310.1 NP_001369239.1 Accepted alive Link to Nucleotide Sequence:NM_001382310.1Link to Protein Sequence:NP_001369239.1Re-query CCDS DB by Nucleotide ID:NM_001382310Re-query CCDS DB by Protein ID:NP_001369239Link to BLAST:NP_001369239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369237.1 354 Q14CW9-2 354 100% 0 0
NP_001369239.1 354 Q14CW9-2 354 100% 0 0

Chromosomal Locations for CCDS 45697.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44194263 44194411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44194517 44194674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44194768 44194839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44195097 44195140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44195419 44195487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44195800 44195828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44196034 44196100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44196396 44196418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44196929 44197026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44197228 44197399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44197598 44197730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44198020 44198070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGAAAATGGAGGAAATGTCTTTGTCTGGCCTGGATAACAGCAAACTAGAGGCCATCGCTCAGGAGATAT
ACGCGGACCTGGTCGAGGATTCTTGTTTGGGATTCTGCTTTGAGGTACACCGGGCTGTCAAGTGTGGCTA
CTTCTTCTTGGACGACACGGACCCTGATAGCATGAAGGATTTTGAGATCGTGGACCAGCCGGGCTTGGAC
ATCTTTGGACAGGTTTTCAACCAGTGGAAGAGCAAGGAGTGTGTTTGCCCCAATTGCAGTCGCAGCATTG
CCGCCTCCCGCTTTGCTCCCCATCTGGAGAAGTGCCTGGGAATGGGTCGGAACAGCAGCCGAATCGCCAA
CCGCCGGATTGCCAATAGCAACAATATGAATAAGTCTGAGAGTGACCAAGAAGATAATGATGACATCAAT
GACAACGACTGGTCCTATGGCTCGGAGAAGAAAGCCAAGAAGAGAAAGTCAGACAAGCTATGGTATCTCC
CATTCCAGAACCCCAATTCCCCTCGAAGATCCAAGTCATTAAAACACAAAAATGGGGAACTTAGCAATTC
GGATCCTTTTAAGTATAACAATTCAACTGGGATCAGCTATGAGACCCTGGGGCCGGAGGAGCTTCGCAGC
CTGCTAACCACGCAATGTGGGGTGATTTCTGAACACACCAAGAAGATGTGCACAAGGTCCCTGCGCTGCC
CACAGCACACAGATGAGCAGAGGCGAACCGTACGGATTTATTTTCTCGGGCCCTCGGCTGTCCTTCCAGA
GGTCGAGAGCTCCCTGGATAATGACAGCTTTGACATGACTGACAGCCAGGCCCTGATCAGCCGGCTTCAG
TGGGACGGCTCCTCTGACCTCTCACCCTCTGATTCAGGCTCCTCCAAGACGAGTGAAAATCAGGGATGGG
GTCTAGGTACCAACAGCTCTGAGTCACGGAAAACCAAGAAAAAGAAATCCCATCTGAGCCTGGTAGGGAC
TGCCTCCGGCCTAGGTTCCAACAAGAAGAAGAAGCCAAAGCCACCGGCACCCCCGACGCCCAGCATCTAT
GATGACATCAACTGA

Translation (354 aa):
MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKDFEIVDQPGLD
IFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRIANSNNMNKSESDQEDNDDIN
DNDWSYGSEKKAKKRKSDKLWYLPFQNPNSPRRSKSLKHKNGELSNSDPFKYNNSTGISYETLGPEELRS
LLTTQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQ
WDGSSDLSPSDSGSSKTSENQGWGLGTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIY
DDIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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