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Report for CCDS42345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42345.1 Public Homo sapiens 17 ATXN7L3 24 110 108 CCDS HistoryNCBI Gene:56970Re-query CCDS DB by CCDS ID:42345.1Re-query CCDS DB by GeneID:56970See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42345.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389384.8 ENSP00000374035.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389384.8Link to Ensembl Protein Viewer:ENSP00000374035.3Re-query CCDS DB by Nucleotide ID:ENST00000389384Re-query CCDS DB by Protein ID:ENSP00000374035
Original member Current member EBI ENST00000587097.6 ENSP00000465614.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000587097.6Link to Ensembl Protein Viewer:ENSP00000465614.2Re-query CCDS DB by Nucleotide ID:ENST00000587097Re-query CCDS DB by Protein ID:ENSP00000465614
Original member Current member NCBI NM_001382309.1 NP_001369238.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382309.1Link to Protein Sequence:NP_001369238.1Re-query CCDS DB by Nucleotide ID:NM_001382309Re-query CCDS DB by Protein ID:NP_001369238Link to BLAST:NP_001369238.1
Original member Current member NCBI NM_001382311.1 NP_001369240.1 Accepted alive Link to Nucleotide Sequence:NM_001382311.1Link to Protein Sequence:NP_001369240.1Re-query CCDS DB by Nucleotide ID:NM_001382311Re-query CCDS DB by Protein ID:NP_001369240Link to BLAST:NP_001369240.1
Original member Current member NCBI NM_001382312.1 NP_001369241.1 Accepted alive Link to Nucleotide Sequence:NM_001382312.1Link to Protein Sequence:NP_001369241.1Re-query CCDS DB by Nucleotide ID:NM_001382312Re-query CCDS DB by Protein ID:NP_001369241Link to BLAST:NP_001369241.1
Original member Current member NCBI NM_001382313.1 NP_001369242.1 Accepted alive Link to Nucleotide Sequence:NM_001382313.1Link to Protein Sequence:NP_001369242.1Re-query CCDS DB by Nucleotide ID:NM_001382313Re-query CCDS DB by Protein ID:NP_001369242Link to BLAST:NP_001369242.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369238.1 347 Q14CW9-1 347 100% 0 0
NP_001369240.1 347 Q14CW9-1 347 100% 0 0
NP_001369241.1 347 Q14CW9-1 347 100% 0 0
NP_001369242.1 347 Q14CW9-1 347 100% 0 0

Chromosomal Locations for CCDS 42345.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44194263 44194411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44194517 44194674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44194768 44194839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44195097 44195140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44195419 44195487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44195800 44195828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44196034 44196079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44196396 44196418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44196929 44197026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44197228 44197399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44197598 44197730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44198020 44198070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGAAAATGGAGGAAATGTCTTTGTCTGGCCTGGATAACAGCAAACTAGAGGCCATCGCTCAGGAGATAT
ACGCGGACCTGGTCGAGGATTCTTGTTTGGGATTCTGCTTTGAGGTACACCGGGCTGTCAAGTGTGGCTA
CTTCTTCTTGGACGACACGGACCCTGATAGCATGAAGGATTTTGAGATCGTGGACCAGCCGGGCTTGGAC
ATCTTTGGACAGGTTTTCAACCAGTGGAAGAGCAAGGAGTGTGTTTGCCCCAATTGCAGTCGCAGCATTG
CCGCCTCCCGCTTTGCTCCCCATCTGGAGAAGTGCCTGGGAATGGGTCGGAACAGCAGCCGAATCGCCAA
CCGCCGGATTGCCAATAGCAACAATATGAATAAGTCTGAGAGTGACCAAGAAGATAATGATGACATCAAT
GACAACGACTGGTCCTATGGCTCGGAGAAGAAAGCCAAGAAGAGAAAGTCAGACAAGAACCCCAATTCCC
CTCGAAGATCCAAGTCATTAAAACACAAAAATGGGGAACTTAGCAATTCGGATCCTTTTAAGTATAACAA
TTCAACTGGGATCAGCTATGAGACCCTGGGGCCGGAGGAGCTTCGCAGCCTGCTAACCACGCAATGTGGG
GTGATTTCTGAACACACCAAGAAGATGTGCACAAGGTCCCTGCGCTGCCCACAGCACACAGATGAGCAGA
GGCGAACCGTACGGATTTATTTTCTCGGGCCCTCGGCTGTCCTTCCAGAGGTCGAGAGCTCCCTGGATAA
TGACAGCTTTGACATGACTGACAGCCAGGCCCTGATCAGCCGGCTTCAGTGGGACGGCTCCTCTGACCTC
TCACCCTCTGATTCAGGCTCCTCCAAGACGAGTGAAAATCAGGGATGGGGTCTAGGTACCAACAGCTCTG
AGTCACGGAAAACCAAGAAAAAGAAATCCCATCTGAGCCTGGTAGGGACTGCCTCCGGCCTAGGTTCCAA
CAAGAAGAAGAAGCCAAAGCCACCGGCACCCCCGACGCCCAGCATCTATGATGACATCAACTGA

Translation (347 aa):
MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKDFEIVDQPGLD
IFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRIANSNNMNKSESDQEDNDDIN
DNDWSYGSEKKAKKRKSDKNPNSPRRSKSLKHKNGELSNSDPFKYNNSTGISYETLGPEELRSLLTTQCG
VISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLGPSAVLPEVESSLDNDSFDMTDSQALISRLQWDGSSDL
SPSDSGSSKTSENQGWGLGTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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