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Report for CCDS24597.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24597.2 Public Mus musculus 11 Or2v1 23 108 98 CCDS HistoryNCBI Gene:18356Re-query CCDS DB by CCDS ID:24597.2See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 24597.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000203810.2 ENSMUSP00000144951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203810.2Link to Ensembl Protein Viewer:ENSMUSP00000144951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203810Re-query CCDS DB by Protein ID:ENSMUSP00000144951
Original member Current member EBI ENSMUST00000203149.2 ENSMUSP00000145429.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203149.2Link to Ensembl Protein Viewer:ENSMUSP00000145429.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203149Re-query CCDS DB by Protein ID:ENSMUSP00000145429
Original member Current member EBI ENSMUST00000238881.1 ENSMUSP00000158965.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238881.1Link to Ensembl Protein Viewer:ENSMUSP00000158965.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238881Re-query CCDS DB by Protein ID:ENSMUSP00000158965
Original member Current member NCBI NM_010999.3 NP_035129.2 Accepted alive Link to Nucleotide Sequence:NM_010999.3Link to Protein Sequence:NP_035129.2Re-query CCDS DB by Nucleotide ID:NM_010999Re-query CCDS DB by Protein ID:NP_035129Link to BLAST:NP_035129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035129.2 315 Q8VGD6-1 315 100% 0 0

Chromosomal Locations for CCDS 24597.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49134194 49135141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGGAATATGGCTGAACGAATCGTCTGTAGATGGGTTCATCCTCCTAGGCATCTTCTCCCAGAGCCAGA
CTGACCTTCTCCTCTTCTCCACAGTTATGCTGGTCTTCACCGTGGCGCTCTGTGGAAATGTCCTCCTCAT
CCTACTCATCTACACTGACCCCCGACTCCACACCCCCATGTACTTCTTCCTCAGTCAGCTCTCCCTCATG
GACCTCATGCTGGTCTGTAACATTGTGCCAAAGATGGCAGTCAACTTCCTGTCTGGCAGGAAGTCCATCT
CTTTTGCCGGCTGTGGCATACAAATCGGATTTTTTGTCTCTCTTGTGGGATCAGAGGGTCTCTTGTTAGG
ACTCATGGCTTATGATCGCTATGTGGCCATTAGCCACCCACTTCACTATCCCATTCTCATGAGCCAAAAG
GTCTGTCTCCAGATTGCTGGAAGTTCCTGGGCTTTTGGGATCCTTGATGGAATAATTCAGATGGTGGCAG
CCATGAGCCTGCCCTACTGTGGCTCACGGTATATAGATCACTTCTTCTGTGAAGTGCCGGCTTTACTGAA
GCTGGCCTGTGCAGACACCTCCCTTTTCGACACCCTGCTCTTTGCTTGCTGTGTCTTTATGCTGCTTCTT
CCTTTCTCGATCATTGTGACTTCCTATGCTCGCATCTTGGGGGCTGTGCTCCGTATGCACTCTGCCCAGT
CCCGAAAAAAGGCCCTGGCCACTTGTTCCTCCCACCTGACAGCTGTCTCTCTCTTCTACGGGGCAGCAAT
GTTCATCTACCTGAGGCCAAGGCGATATCGCGCTCCTAGCCATGACAAAGTTGTCTCAATCTTCTACACA
GTTCTTACTCCTATGCTCAACCCCCTCATTTATAGCTTGAGGAACAGGGAGGTGATGGGGGCACTGAGGA
AAGGACTGGACCGCTGCAGGGTTGGCAGCCAACATTGA

Translation (315 aa):
MGIWLNESSVDGFILLGIFSQSQTDLLLFSTVMLVFTVALCGNVLLILLIYTDPRLHTPMYFFLSQLSLM
DLMLVCNIVPKMAVNFLSGRKSISFAGCGIQIGFFVSLVGSEGLLLGLMAYDRYVAISHPLHYPILMSQK
VCLQIAGSSWAFGILDGIIQMVAAMSLPYCGSRYIDHFFCEVPALLKLACADTSLFDTLLFACCVFMLLL
PFSIIVTSYARILGAVLRMHSAQSRKKALATCSSHLTAVSLFYGAAMFIYLRPRRYRAPSHDKVVSIFYT
VLTPMLNPLIYSLRNREVMGALRKGLDRCRVGSQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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