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Report for CCDS45992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45992.1 Public Homo sapiens 19 TNPO2 24 110 108 CCDS HistoryNCBI Gene:30000Re-query CCDS DB by CCDS ID:45992.1Re-query CCDS DB by GeneID:30000See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45992.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356861.9 ENSP00000349321.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356861.9Link to Ensembl Protein Viewer:ENSP00000349321.4Re-query CCDS DB by Nucleotide ID:ENST00000356861Re-query CCDS DB by Protein ID:ENSP00000349321
Original member Current member EBI ENST00000450764.6 ENSP00000397379.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450764.6Link to Ensembl Protein Viewer:ENSP00000397379.2Re-query CCDS DB by Nucleotide ID:ENST00000450764Re-query CCDS DB by Protein ID:ENSP00000397379
Original member Current member EBI ENST00000588216.5 ENSP00000465625.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000588216.5Link to Ensembl Protein Viewer:ENSP00000465625.1Re-query CCDS DB by Nucleotide ID:ENST00000588216Re-query CCDS DB by Protein ID:ENSP00000465625
Original member Current member NCBI NM_001136195.2 NP_001129667.1 Accepted alive Link to Nucleotide Sequence:NM_001136195.2Link to Protein Sequence:NP_001129667.1Re-query CCDS DB by Nucleotide ID:NM_001136195Re-query CCDS DB by Protein ID:NP_001129667Link to BLAST:NP_001129667.1
Original member Current member NCBI NM_001382236.1 NP_001369165.1 Accepted alive Link to Nucleotide Sequence:NM_001382236.1Link to Protein Sequence:NP_001369165.1Re-query CCDS DB by Nucleotide ID:NM_001382236Re-query CCDS DB by Protein ID:NP_001369165Link to BLAST:NP_001369165.1
Original member Current member NCBI NM_001382237.1 NP_001369166.1 Accepted alive Link to Nucleotide Sequence:NM_001382237.1Link to Protein Sequence:NP_001369166.1Re-query CCDS DB by Nucleotide ID:NM_001382237Re-query CCDS DB by Protein ID:NP_001369166Link to BLAST:NP_001369166.1
Original member Current member NCBI NM_001382238.1 NP_001369167.1 Accepted alive Link to Nucleotide Sequence:NM_001382238.1Link to Protein Sequence:NP_001369167.1Re-query CCDS DB by Nucleotide ID:NM_001382238Re-query CCDS DB by Protein ID:NP_001369167Link to BLAST:NP_001369167.1
Original member Current member NCBI NM_001382239.1 NP_001369168.1 Accepted alive Link to Nucleotide Sequence:NM_001382239.1Link to Protein Sequence:NP_001369168.1Re-query CCDS DB by Nucleotide ID:NM_001382239Re-query CCDS DB by Protein ID:NP_001369168Link to BLAST:NP_001369168.1
Original member Current member NCBI NM_013433.5 NP_038461.2 Accepted alive Link to Nucleotide Sequence:NM_013433.5Link to Protein Sequence:NP_038461.2Re-query CCDS DB by Nucleotide ID:NM_013433Re-query CCDS DB by Protein ID:NP_038461Link to BLAST:NP_038461.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129667.1 887 O14787-2 887 100% 0 0
NP_001369165.1 887 O14787-2 887 100% 0 0
NP_001369166.1 887 O14787-2 887 100% 0 0
NP_001369167.1 887 O14787-2 887 100% 0 0
NP_001369168.1 887 O14787-2 887 100% 0 0
NP_038461.2 887 O14787-2 887 100% 0 0

Chromosomal Locations for CCDS 45992.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12701346 12701453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12701598 12701672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12701752 12701851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12702072 12702147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12702823 12702918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12703428 12703526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12703714 12703801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12705240 12705398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12705492 12705599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12705682 12705768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12706196 12706367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12706570 12706795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12710621 12710773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12711296 12711461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12711553 12711613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12714821 12714939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12715047 12715169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12715243 12715324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12715405 12715538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12715633 12715739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12719029 12719178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12719261 12719336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12720879 12720977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGGACTGGCAGCCAGACGAGCAGGGCCTGCAGCAGGTCCTGCAGCTGCTCAAAGACTCACAGTCGCCCA
AC
ACAGCCACTCAGCGCATCGTGCAGGATAAACTCAAACAACTCAATCAGTTTCCTGACTTCAACAACTA
C
CTGATTTTCGTCCTGACCAGACTCAAGTCAGAAGATGAGCCAACGCGCTCTCTCAGTGGCCTCATCCTC
AAG
AACAACGTGAAGGCACACTATCAGAGCTTCCCACCCCCTGTGGCAGACTTCATCAAACAGGAGTGTC
TC
AACAACATTGGCGATGCCTCCTCGCTCATCCGAGCCACCATTGGCATTCTCATCACCACCATCGCTTC
C
AAGGGTGAGCTGCAGATGTGGCCCGAGCTGCTGCCCCAGCTCTGCAACCTGCTTAACTCGGAGGATTAC
AAC
ACTTGTGAGGGAGCCTTTGGAGCCCTGCAGAAGATCTGTGAAGACTCATCAGAGCTTCTGGACAGTG
AC
GCCCTCAACAGGCCCCTCAACATCATGATCCCCAAGTTCCTGCAGTTCTTCAAGCACTGCAGTCCCAA
G
ATCCGGTCCCACGCCATCGCCTGCGTGAACCAGTTCATCATGGACCGGGCCCAGGCGCTGATGGACAAT
ATT
GACACCTTCATCGAGCACCTATTTGCCCTGGCTGTGGATGATGACCCCGAGGTGCGGAAGAATGTGT
GC
CGTGCCCTGGTGATGCTTCTGGAAGTGCGGATTGACAGGCTCATCCCCCACATGCACAGCATCATCCA
G
TACATGCTGCAGAGGACCCAGGACCATGATGAGAACGTTGCCCTTGAGGCCTGTGAGTTCTGGCTGACG
CTG
GCCGAGCAGCCCATCTGCAAGGAAGTCCTGGCCTCCCATCTGGTCCAGTTGATCCCCATCTTGGTGA
AT
GGGATGAAGTACTCGGAAATTGACATCATCCTGCTCAAGGGGGATGTGGAGGAGGATGAGGCTGTCCC
C
GACAGTGAGCAGGACATCAAGCCACGCTTCCACAAGTCACGCACGGTCACACTGCCCCACGAGGCTGAG
CGG
CCTGATGGCTCCGAGGACGCGGAGGATGACGATGATGATGATGCTCTGTCCGACTGGAATTTGAGGA
AG
TGCTCAGCGGCTGCACTGGACGTCCTCGCCAATGTCTTCCGGGAGGAACTGCTGCCCCACCTACTCCC
A
CTACTCAAAGGCCTCCTCTTCCACCCCGAGTGGGTGGTCAAGGAGTCGGGCATCCTGGTGCTGGGCGCC
ATT
GCTGAGGGCTGCATGCAGGGCATGGTGCCCTACCTGCCTGAGCTGATCCCGCACCTGATCCAGTGCC
TG
TCGGATAAGAAGGCCTTGGTCCGCTCCATCGCCTGCTGGACGCTGAGCCGCTATGCCCACTGGGTGGT
C
AGCCAGCCACCCGACATGCACCTCAAGCCCCTGATGACAGAGCTGCTCAAACGCATCCTGGATGGCAAC
AAG
AGGGTACAGGAGGCGGCCTGCAGTGCTTTTGCCACCCTGGAGGAAGAGGCCTGCACGGAGCTGGTGC
CC
TACCTCAGCTACATCCTGGACACCCTTGTCTTTGCCTTTGGGAAATACCAGCACAAGAACCTGCTCAT
C
CTCTATGACGCCATTGGCACCCTGGCCGACTCTGTAGGCCACCACCTCAACCAGCCGGAATACATCCAG
AAG
CTGATGCCCCCACTGATCCAGAAGTGGAATGAGCTCAAGGACGAAGACAAGGACCTCTTCCCCCTGC
TG
GAGTGTCTGTCATCGGTGGCCACCGCCCTGCAGAGTGGCTTCCTGCCTTACTGTGAGCCCGTCTACCA
G
CGCTGTGTCACCCTGGTGCAGAAGACACTGGCTCAGGCCATGATGTACACCCAGCACCCTGAGCAGTAT
GAG
GCTCCCGACAAGGACTTCATGATCGTAGCACTGGATCTGCTCAGCGGCCTGGCCGAGGGCCTGGGTG
GT
CACGTGGAGCAGCTGGTGGCCCGCAGCAACATCATGACATTGCTGTTCCAGTGCATGCAGGACTCGAT
G
CCTGAGGTCCGGCAGAGCTCCTTTGCCCTCCTGGGAGACCTCACCAAAGCCTGCTTCATCCATGTCAAG
CCC
TGTATCGCCGAGTTCATGCCCATTCTGGGCACCAACCTGAACCCAGAGTTCATCTCCGTCTGCAACA
AC
GCCACCTGGGCCATTGGTGAAATCTGCATGCAGATGGGGGCAGAGATGCAGCCTTATGTGCAGATGGT
C
CTCAACAACCTGGTGGAAATCATTAACCGACCCAACACACCCAAGACACTGCTGGAAAACACAGCCATC
ACC
ATCGGCCGCTTGGGCTACGTGTGCCCCCAGGAGGTGGCACCCATGCTGCAGCAGTTCATCCGGCCTT
G
G
TGCACGTCCCTCAGGAACATCAGGGACAACGAGGAGAAGGACTCAGCCTTCCGCGGCATCTGCATGAT
G
ATCGGTGTCAACCCGGGGGGCGTTGTGCAGGACTTTATTTTCTTCTGCGATGCTGTAGCCTCCTGGGTG
AGC
CCGAAGGATGACCTTCGGGACATGTTTTATAAGATTCTCCACGGCTTCAAAGACCAAGTTGGGGAAG
AT
AACTGGCAGCAGTTCTCTGAGCAATTCCCGCCGCTGCTCAAGGAGAGGCTGGCGGCTTTCTATGGGGT
C
TAG


Translation (887 aa):
MDWQPDEQGLQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEPTRSLSGLIL
K
NNVKAHYQSFPPPVADFIKQECLNNIGDASSLIRATI
GILITTIASKGELQMWPELLPQLCNLLNSEDY
N
TCE
GAFGALQKICEDSSELLDSDALNRPLNIMIPKFLQFFKHCSPKIRSHAIACVNQFIMDRAQALMDN
I
DTFIE
HLFALAVDDDPEVRKNVCRALVMLLEVRIDRLIPHMHSIIQYMLQRTQDHDENVALEACEFWLT
L
AEQPICKEVLASHLV
QLIPILVNGMKYSEIDIILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLPHEAE
R
PDGSEDAEDDDDDDALSDWNL
RKCSAAALDVLANVFREELLPHLLPLLKGLLFHPEWVVKESGILVLGA
I
AE
GCMQGMVPYLPELIPHLIQCLSDKKALVRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILDGN
K
RVQEAAC
SAFATLEEEACTELVPYLSYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQPEYIQ
K
LMPPLIQKWNELKDEDKDLFPLLE
CLSSVATALQSGFLPYCEPVYQRCVTLVQKTLAQAMMYTQHPEQY
E
APDKDFMIVALDLLSGLAEGLGGHVEQLVARSNIMTLLFQCMQ
DSMPEVRQSSFALLGDLTKACFIHVK
P
CI
AEFMPILGTNLNPEFISVCNNATWAIGEICMQMGAEMQPYVQMVLNNLVEIINRPNTPKTLLENTAI
T
IGRLGYVCPQEVAPMLQQFIRP
WCTSLRNIRDNEEKDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWV
S
PKDDLRDMFYK
ILHGFKDQVGEDNWQQFSEQFPPLLKERLAAFYGV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser