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Report for CCDS45016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45016.1 Public Homo sapiens 13 ZMYM2 24 110 108 CCDS HistoryNCBI Gene:7750Re-query CCDS DB by CCDS ID:45016.1Re-query CCDS DB by GeneID:7750See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45016.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382871.3 ENSP00000372324.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382871.3Link to Ensembl Protein Viewer:ENSP00000372324.2Re-query CCDS DB by Nucleotide ID:ENST00000382871Re-query CCDS DB by Protein ID:ENSP00000372324
Original member Current member EBI ENST00000382874.6 ENSP00000372327.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382874.6Link to Ensembl Protein Viewer:ENSP00000372327.2Re-query CCDS DB by Nucleotide ID:ENST00000382874Re-query CCDS DB by Protein ID:ENSP00000372327
Original member Current member EBI ENST00000610343.5 ENSP00000479904.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000610343.5Link to Ensembl Protein Viewer:ENSP00000479904.1Re-query CCDS DB by Nucleotide ID:ENST00000610343Re-query CCDS DB by Protein ID:ENSP00000479904
Original member Current member NCBI NM_001190964.4 NP_001177893.1 Accepted alive Link to Nucleotide Sequence:NM_001190964.4Link to Protein Sequence:NP_001177893.1Re-query CCDS DB by Nucleotide ID:NM_001190964Re-query CCDS DB by Protein ID:NP_001177893Link to BLAST:NP_001177893.1
Original member Current member NCBI NM_001190965.4 NP_001177894.1 Accepted alive Link to Nucleotide Sequence:NM_001190965.4Link to Protein Sequence:NP_001177894.1Re-query CCDS DB by Nucleotide ID:NM_001190965Re-query CCDS DB by Protein ID:NP_001177894Link to BLAST:NP_001177894.1
Original member Current member NCBI NM_001353157.2 NP_001340086.1 Accepted alive Link to Nucleotide Sequence:NM_001353157.2Link to Protein Sequence:NP_001340086.1Re-query CCDS DB by Nucleotide ID:NM_001353157Re-query CCDS DB by Protein ID:NP_001340086Link to BLAST:NP_001340086.1
Original member Current member NCBI NM_001353159.2 NP_001340088.1 Accepted alive Link to Nucleotide Sequence:NM_001353159.2Link to Protein Sequence:NP_001340088.1Re-query CCDS DB by Nucleotide ID:NM_001353159Re-query CCDS DB by Protein ID:NP_001340088Link to BLAST:NP_001340088.1
Original member Current member NCBI NM_001353162.3 NP_001340091.1 Accepted alive Link to Nucleotide Sequence:NM_001353162.3Link to Protein Sequence:NP_001340091.1Re-query CCDS DB by Nucleotide ID:NM_001353162Re-query CCDS DB by Protein ID:NP_001340091Link to BLAST:NP_001340091.1
Original member Current member NCBI NM_001353164.2 NP_001340093.1 Accepted alive Link to Nucleotide Sequence:NM_001353164.2Link to Protein Sequence:NP_001340093.1Re-query CCDS DB by Nucleotide ID:NM_001353164Re-query CCDS DB by Protein ID:NP_001340093Link to BLAST:NP_001340093.1
Original member Current member NCBI NM_003453.6 NP_003444.1 Accepted alive Link to Nucleotide Sequence:NM_003453.6Link to Protein Sequence:NP_003444.1Re-query CCDS DB by Nucleotide ID:NM_003453Re-query CCDS DB by Protein ID:NP_003444Link to BLAST:NP_003444.1
Original member Current member NCBI NM_197968.4 NP_932072.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_197968.4Link to Protein Sequence:NP_932072.1Re-query CCDS DB by Nucleotide ID:NM_197968Re-query CCDS DB by Protein ID:NP_932072Link to BLAST:NP_932072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177893.1 1377 Q9UBW7-1 1377 100% 0 0
NP_001177894.1 1377 Q9UBW7-1 1377 100% 0 0
NP_001340086.1 1377 Q9UBW7-1 1377 100% 0 0
NP_001340088.1 1377 Q9UBW7-1 1377 100% 0 0
NP_001340091.1 1377 Q9UBW7-1 1377 100% 0 0
NP_001340093.1 1377 Q9UBW7-1 1377 100% 0 0
NP_003444.1 1377 Q9UBW7-1 1377 100% 0 0
NP_932072.1 1377 Q9UBW7-1 1377 100% 0 0

Chromosomal Locations for CCDS 45016.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 19993073 19993919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20002850 20003135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20005074 20005239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20006374 20006586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20019547 20019618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20026612 20026762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20027203 20027318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20031319 20031435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20034254 20034404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20036737 20036909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20051433 20051598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20052277 20052311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20058575 20058704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20059447 20059562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20061053 20061224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20062846 20062971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20064451 20064545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20066851 20067019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20067239 20067390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20082016 20082130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20082781 20083032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20083656 20083776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20085822 20086014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4134 nt):
ATGGACACAAGTTCAGTGGGAGGATTAGAATTGACTGATCAGACTCCTGTTTTATTAGGGAGTACGGCCA
TGGCAACTAGTCTCACGAATGTAGGAAACTCATTTAGTGGTCCAGCTAATCCTTTAGTGTCTAGATCTAA
TAAGTTTCAGAACTCGTCAGTGGAAGATGATGATGATGTTGTTTTTATCGAACCTGTACAACCTCCCCCA
CCTTCTGTACCAGTGGTAGCTGATCAAAGAACCATAACATTTACATCATCAAAAAATGAAGAACTACAAG
GAAATGATTCCAAAATTACTCCTTCCTCAAAAGAGTTGGCATCTCAGAAGGGAAGTGTAAGTGAGACAAT
TGTCATTGATGATGAAGAGGACATGGAAACAAATCAAGGGCAAGAGAAAAATTCCTCCAATTTTATTGAA
CGAAGACCTCCTGAGACTAAAAACAGAACCAATGATGTGGATTTCTCCACTTCCAGTTTTTCAAGAAGTA
AGGTAAATGCAGGAATGGGTAATAGTGGTATCACCACAGAACCAGACTCTGAAATTCAGATTGCTAATGT
TACAACTTTAGAAACAGGTGTAAGCTCTGTGAATGATGGCCAATTAGAAAATACTGACGGGCGAGATATG
AACTTAATGATTACACATGTAACATCACTGCAGAATACCAACTTGGGAGATGTCTCTAACGGACTGCAGT
CAAGTAATTTTGGTGTTAATATACAAACATACACCCCATCTTTAACTTCACAGACCAAGACTGGAGTAGG
ACCTTTTAATCCTGGTAGAATGAATGTGGCAGGAGACGTTTTTCAGAATGGAGAATCTGCAACTCATCAT
AATCCTGATTCTTGGATCTCCCAGTCAGCTTCATTTCCCCGTAATCAGAAACAACCAGGGGTGGACTCTT
TATCACCAGTGGCCTCACTTCCTAAACAGATTTTCCAGCCGTCTGTCCAACAGCAGCCTACTAAACCAGT
TAAAGTCACTTGTGCAAACTGCAAAAAACCTTTACAGAAGGGCCAGACAGCTTATCAACGAAAAGGATCA
GCTCACCTCTTTTGTTCTACCACCTGCCTTTCTTCCTTCTCCCACAAGCCTGCTCCAAAGAAACTCTGTG
TTATGTGTAAAAAAGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGATTCAAGTGAGTCCTT
CCAGGAATTCTGTAGTACATCTTGTTTATCTCTCTATGAAGACAAACAGAATCCTACTAAAGGAGCTCTA
AATAAATCAAGATGTACAATCTGTGGTAAACTAACTGAGATTCGCCATGAAGTCAGCTTTAAAAATATGA
CTCATAAGCTGTGCAGTGACCACTGCTTTAATAGATATAGAATGGCCAATGGTTTAATAATGAATTGCTG
TGAACAGTGTGGAGAGTACTTGCCCAGTAAAGGTGCTGGAAATAATGTTCTGGTGATTGATGGTCAACAG
AAAAGATTTTGCTGTCAAAGTTGTGTCAGTGAATACAAACAGGTAGGTAGCCATCCAAGCTTCCTGAAGG
AGGTTCGAGATCACATGCAGGACTCTTTCTTAATGCAGCCTGAGAAATATGGAAAACTGACAACTTGTAC
TGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGTATAGGTCCTAATGGATATATGGAGCCA
TATTGTTCAACTGCTTGTATGAACAGTCACAAGACAAAATATGCAAAATCACAAAGTTTGGGAATTATTT
GCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTACAACTT
TTGCAATTCCAGTTGTGTGGCTAAATTTCAGGCTCTAAGTATGCAGTCATCTCCAAATGGCCAGTTTGTA
GCGCCAAGTGATATTCAGTTGAAATGCAACTACTGCAAAAATTCCTTTTGTTCAAAACCAGAAATCCTGG
AATGGGAGAACAAAGTGCATCAGTTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGTTGCATTGCAT
AGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAG
AGACCTTTCTGTAGTGAAGGCTGCAAATTATTATACAAACAGGATTTTGCCAGACGTTTAGGATTGAGAT
GTGTTACTTGCAACTATTGTTCTCAGCTATGTAAGAAGGGAGCAACTAAAGAACTCGATGGTGTTGTGAG
AGATTTCTGCAGTGAAGATTGCTGTAAAAAATTTCAGGATTGGTACTACAAGGCTGCAAGGTGTGACTGT
TGTAAATCTCAAGGAACTCTTAAAGAGCGAGTTCAGTGGCGTGGGGAAATGAAACATTTCTGTGATCAAC
ATTGCTTACTGCGTTTCTACTGTCAACAAAATGAGCCCAACATGACAACTCAGAAAGGACCTGAAAACTT
ACATTATGATCAGGGTTGTCAGACATCTCGAACCAAAATGACAGGTTCAGCACCACCCCCTTCTCCAACA
CCTAACAAAGAGATGAAGAACAAAGCAGTTCTTTGCAAACCTTTAACAATGACAAAAGCTACTTACTGTA
AACCTCACATGCAGACCAAATCTTGTCAGACAGATGATACTTGGAGGACAGAATATGTTCCAGTGCCTAT
CCCTGTGCCTGTGTATATCCCAGTTCCTATGCACATGTACAGTCAGAATATTCCTGTTCCTACTACAGTT
CCTGTTCCTGTGCCAGTTCCTGTTTTTCTGCCTGCTCCATTGGACAGCAGTGAGAAGATTCCTGCAGCAA
TTGAGGAGCTAAAAAGCAAGGTTTCTTCAGATGCTCTTGATACAGAGTTGCTTACAATGACGGATATGAT
GAGTGAAGACGAGGGGAAAACAGAGACAACCAACATCAACAGTGTAATTATTGAAACAGATATAATTGGT
TCAGACCTTTTGAAGAACTCTGACCCAGAGACACAGTCCAGCATGCCTGATGTACCATATGAACCAGATT
TGGATATCGAAATAGATTTTCCCAGAGCTGCTGAGGAGCTTGATATGGAAAATGAATTTTTATTACCACC
TGTTTTTGGCGAAGAATATGAGGAACAGCCCAGACCTCGATCTAAAAAAAAGGGAGCCAAGAGAAAGGCT
GTATCAGGATACCAGTCTCATGATGATAGTTCTGACAATTCAGAATGCAGCTTTCCTTTCAAATATACGT
ATGGCGTAAATGCATGGAAACACTGGGTCAAAACTAGGCAACTTGATGAAGATCTTCTGGTATTAGATGA
GTTAAAATCTTCTAAATCAGTAAAGTTAAAAGAGGATCTACTCTCTCACACCACAGCTGAGCTTAACTAT
GGGTTAGCTCATTTTGTCAATGAGATCCGACGGCCAAATGGAGAGAATTATGCACCTGACAGCATCTATT
ACCTTTGCCTTGGAATACAGGAGTATTTGTGTGGAAGTAATCGAAAAGACAACATATTTATTGATCCTGG
ATACCAAACATTTGAGCAAGAATTGAATAAAATACTGCGAAGCTGGCAACCAAGCATACTTCCAGATGGG
TCAATATTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCACACTCTCCAGTAG
CTCTTCTGAATACACTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAG
ACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACGATGGAAAACAAAGCGTGTCTT
CGATACCAAGTGTCTTCCTTGTGTGGAACAGATAATGAAGATAAAATTACTACTGGAAAAAGAAAACATG
AAGATGATGAGCCAGTATTTGAACAAATTGAAAACACAGCCAATCCTTCCAGATGTCCTGTGAAAATGTT
TGAATGCTACTTGTCTAAAAGTCCACAGAATCTTAATCAGAGGATGGATGTTTTTTATTTGCAACCAGAA
TGCTCTAGTTCTACAGATAGCCCTGTCTGGTATACGTCTACTTCACTGGACCGAAACACCTTGGAAAATA
TGCTTGTACGGGTTCTTCTAGTAAAAGATATTTATGATAAAGACAATTATGAACTGGATGAAGACACAGA
CTAA

Translation (1377 aa):
MDTSSVGGLELTDQTPVLLGSTAMATSLTNVGNSFSGPANPLVSRSNKFQNSSVEDDDDVVFIEPVQPPP
PSVPVVADQRTITFTSSKNEELQGNDSKITPSSKELASQKGSVSETIVIDDEEDMETNQGQEKNSSNFIE
RRPPETKNRTNDVDFSTSSFSRSKVNAGMGNSGITTEPDSEIQIANVTTLETGVSSVNDGQLENTDGRDM
NLMITHVTSLQNTNLGDVSNGLQSSNFGVNIQTYTPSLTSQTKTGVGPFNPGRMNVAGDVFQNGESATHH
NPDSWISQSASFPRNQKQPGVDSLSPVASLPKQIFQPSVQQQPTKPVKVTCANCKKPLQKGQTAYQRKGS
AHLFCSTTCLSSFSHKPAPKKLCVMCKKDITTMKGTIVAQVDSSESFQEFCSTSCLSLYEDKQNPTKGAL
NKSRCTICGKLTEIRHEVSFKNMTHKLCSDHCFNRYRMANGLIMNCCEQCGEYLPSKGAGNNVLVIDGQQ
KRFCCQSCVSEYKQVGSHPSFLKEVRDHMQDSFLMQPEKYGKLTTCTGCRTQCRFFDMTQCIGPNGYMEP
YCSTACMNSHKTKYAKSQSLGIICHFCKRNSLPQYQATMPDGKLYNFCNSSCVAKFQALSMQSSPNGQFV
APSDIQLKCNYCKNSFCSKPEILEWENKVHQFCSKTCSDDYKKLHCIVTYCEYCQEEKTLHETVNFSGVK
RPFCSEGCKLLYKQDFARRLGLRCVTCNYCSQLCKKGATKELDGVVRDFCSEDCCKKFQDWYYKAARCDC
CKSQGTLKERVQWRGEMKHFCDQHCLLRFYCQQNEPNMTTQKGPENLHYDQGCQTSRTKMTGSAPPPSPT
PNKEMKNKAVLCKPLTMTKATYCKPHMQTKSCQTDDTWRTEYVPVPIPVPVYIPVPMHMYSQNIPVPTTV
PVPVPVPVFLPAPLDSSEKIPAAIEELKSKVSSDALDTELLTMTDMMSEDEGKTETTNINSVIIETDIIG
SDLLKNSDPETQSSMPDVPYEPDLDIEIDFPRAAEELDMENEFLLPPVFGEEYEEQPRPRSKKKGAKRKA
VSGYQSHDDSSDNSECSFPFKYTYGVNAWKHWVKTRQLDEDLLVLDELKSSKSVKLKEDLLSHTTAELNY
GLAHFVNEIRRPNGENYAPDSIYYLCLGIQEYLCGSNRKDNIFIDPGYQTFEQELNKILRSWQPSILPDG
SIFSRVEEDYLWRIKQLGSHSPVALLNTLFYFNTKYFGLKTVEQHLRLSFGTVFRHWKKNPLTMENKACL
RYQVSSLCGTDNEDKITTGKRKHEDDEPVFEQIENTANPSRCPVKMFECYLSKSPQNLNQRMDVFYLQPE
CSSSTDSPVWYTSTSLDRNTLENMLVRVLLVKDIYDKDNYELDEDTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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