NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57701.1 Public Mus musculus 9 Iho1 23 108 98 CCDS HistoryNCBI Gene:434438Re-query CCDS DB by CCDS ID:57701.1Re-query CCDS DB by GeneID:434438See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076592.3 ENSMUSP00000075898.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076592.3Link to Ensembl Protein Viewer:ENSMUSP00000075898.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076592Re-query CCDS DB by Protein ID:ENSMUSP00000075898
Original member NCBI NM_001135198.1 NP_001128670.1 Updated not alive Link to Nucleotide Sequence:NM_001135198.1Link to Protein Sequence:NP_001128670.1Re-query CCDS DB by Nucleotide ID:NM_001135198Re-query CCDS DB by Protein ID:NP_001128670
Current member NCBI NM_001135198.2 NP_001128670.1 Accepted alive Link to Nucleotide Sequence:NM_001135198.2Link to Protein Sequence:NP_001128670.1Re-query CCDS DB by Nucleotide ID:NM_001135198Re-query CCDS DB by Protein ID:NP_001128670Link to BLAST:NP_001128670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128670.1 574 Q6PDM4 574 100% 0 0

Chromosomal Locations for CCDS 57701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 108404763 108405854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108406611 108406714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108412493 108412580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108412963 108413011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108417322 108417485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108421390 108421561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 108428416 108428471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGAATTTTAATGTCTGGAATGTTAAAGAGATGCTCAGCATCCCCTCAGGCTCTGGGATCACTAAACCAT
CTAACTGGAATAATAATCAGACTGACTGTTCTCTCAGTGATTCCCAGTTCCTCTTTGGATCTCAGTTCTG
TCCTGAAAATTCAGAGACTCTGCTACCGTCCTTGGATGCTGGTGCTTGCTTAAGACACCCAAAACAGACA
CAACAGAATTCTGTGGATAGTGAACCTAGTATTTTCATAAAATACCAGGCAAAGCCCCAGTTGCTTGGAG
GCGATACAAAAGATGAAAGCTTATTTTCTCTTCCTTTGCCAGTTGGGAAATCAAAAGGACTCTCAAAACA
GTTTGAGGAGAAAAAACGAAGGGCAACGGACCAATCTGACAGTGAGACCCTGCACAGCTTTGTTTCTCAT
TTTCCAGAAGTCATTAACAAGTTGCAGACATCTGTGGAAAAGACTGAGGAAAATCTCAGCTCTAGAAGCC
AGTCTATTTTAGATTCTGTGGAGACCATAGCCAAGACTTTTCAAGAGACTGCACGGGTCCAGCACGACCT
GATGGTTGAGTCAGTGAGAGACAAAGGCAGCATGGAGCAGGCCATCCTTGAGATCCAGCGGACATGTGCA
GCTAGACAAGCAGAATTTATGGAGATGAAATCCACCCTGAAGAACCTTGAAGTTTTAGTTGTGGAGCAGA
CTAAGAACTTGCAGCAGTTTTGTGACAACCTGAGCCAGCTCATTGTGCCTGGTATCCTAGAAGAGCTGAA
AAAATTCACCTCTGTGCCTCAGGTGGCTGGGCATCTGAAAGACAGCACCTCTCAGACCTCACCATCTCTG
ACCCAGAGCCTCCATTTTACCAGGCAGGAAAAGCATCCCTCTGAGGAGCCAGCTACTTGGCAGGCCCAGG
AGGCTCCTGCAGGAAATCCCAGTACGAGTTCCCAGAGGCCTGGGGAGTGTGGTGTCTGGGATGAAGGAGC
AGAGAGTGGTGTTTTTCAAAAGGCTGCATTGCCAACAGATGGGCTCCATAGAGGCGATGGGCATGTAAAG
AACAAGACCGTGCCGACTTACTGCAAGAACTGGGTCATGACCACCAGAAGCGTCAGTAACCACTTCTCTA
ACCTCCCAAGCCAGAGGGCTGGCAATGGCCAAGGTCTGATGGCCCAAGGAGCTTCACAGCGGGACGTAAG
TAAGTTTGAAGCCAGAGTGAAGAATGCCTGCCCCGAATATGGGCCCCAAAGCATGTGTTCTTTTGACTCA
CTTGAACAGTCAGCAACCGAACAGAAAGGCAGGCCCTGCAGAAAAAGGAGGAGAGGCAAGAAGCAACAAC
CCCAGAGATCAAAGAGAGGTGGGCTTCTAGATAGGAAGCAAGGACAGACCTCAAAGGCGGCCTGTGCTTT
CATAGCTAGGCATCACTGCCCCCAGTCTCCAGTGTGTGATCCACAGGGGCCCCTCATCTGTTGGCTGACT
CCGAGAAGTTCCACAAAGTCAACCTGTCACATTTTGGGAGGAACGGGAGAGACCAGTCAGACAGCAAGGG
CAGCACAAGGGAACCTCGTGCAGCATTCCCAGCGCTCTTCCACAGACAGCAGCTCCCAGGGAGACCAGCA
GATAAATTGGTTCAGTGACCTCAGCCTTGAAAACCTAGAGCCGCCACAGTGTAAGAAGGGAGGGACGAAT
TTGCTCTGTGACCCGGATTTTGATAGCAGCGATGATAATTTCTAA

Translation (574 aa):
MNFNVWNVKEMLSIPSGSGITKPSNWNNNQTDCSLSDSQFLFGSQFCPENSETLLPSLDAGACLRHPKQT
QQNSVDSEPSIFIKYQAKPQLLGGDTKDESLFSLPLPVGKSKGLSKQFEEKKRRATDQSDSETLHSFVSH
FPEVINKLQTSVEKTEENLSSRSQSILDSVETIAKTFQETARVQHDLMVESVRDKGSMEQAILEIQRTCA
ARQAEFMEMKSTLKNLEVLVVEQTKNLQQFCDNLSQLIVPGILEELKKFTSVPQVAGHLKDSTSQTSPSL
TQSLHFTRQEKHPSEEPATWQAQEAPAGNPSTSSQRPGECGVWDEGAESGVFQKAALPTDGLHRGDGHVK
NKTVPTYCKNWVMTTRSVSNHFSNLPSQRAGNGQGLMAQGASQRDVSKFEARVKNACPEYGPQSMCSFDS
LEQSATEQKGRPCRKRRRGKKQQPQRSKRGGLLDRKQGQTSKAACAFIARHHCPQSPVCDPQGPLICWLT
PRSSTKSTCHILGGTGETSQTARAAQGNLVQHSQRSSTDSSSQGDQQINWFSDLSLENLEPPQCKKGGTN
LLCDPDFDSSDDNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH