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Report for CCDS53793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53793.1 Public Homo sapiens 12 SLC11A2 24 110 108 CCDS HistoryNCBI Gene:4891Re-query CCDS DB by CCDS ID:53793.1Re-query CCDS DB by GeneID:4891See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394904.9 ENSP00000378364.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394904.9Link to Ensembl Protein Viewer:ENSP00000378364.3Re-query CCDS DB by Nucleotide ID:ENST00000394904Re-query CCDS DB by Protein ID:ENSP00000378364
Original member Current member NCBI NM_001174125.2 NP_001167596.1 Accepted alive Link to Nucleotide Sequence:NM_001174125.2Link to Protein Sequence:NP_001167596.1Re-query CCDS DB by Nucleotide ID:NM_001174125Re-query CCDS DB by Protein ID:NP_001167596Link to BLAST:NP_001167596.1
Original member Current member NCBI NM_001379455.1 NP_001366384.1 Accepted alive Link to Nucleotide Sequence:NM_001379455.1Link to Protein Sequence:NP_001366384.1Re-query CCDS DB by Nucleotide ID:NM_001379455Re-query CCDS DB by Protein ID:NP_001366384Link to BLAST:NP_001366384.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167596.1 590 P49281-3 590 100% 0 0
NP_001366384.1 590 P49281-3 590 100% 0 0

Chromosomal Locations for CCDS 53793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 50988325 50988435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50990795 50990948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50991599 50991672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50992190 50992339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50992810 50992929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50994544 50994630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50995629 50995787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50996817 50996972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50999174 50999241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50999345 50999415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51000313 51000419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51004788 51004907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51005311 51005436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51008476 51008624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51010695 51010766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51028177 51028225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGAGGAAGAAGCAGCTGAAGACGGAGGCAGCTCCACACTGTGAACTAAAATCATATTCTAAGAACTCAG
CCACTCAGGTATCCACCATGGTGCTGGGTCCTGAACAGAAGATGTCAGATGACAGTGTTTCTGGAGATCA
TGGGGAGTCTGCCAGTCTTGGTAACATCAACCCTGCCTATAGTAATCCCTCTCTTTCACAGTCCCCTGGG
GACTCAGAGGAGTACTTCGCCACTTACTTTAATGAGAAGATCTCCATTCCTGAGGAGGAGTACTCTTGTT
TTAGCTTTCGTAAACTCTGGGCTTTCACCGGACCAGGTTTTCTTATGAGCATTGCCTACCTGGATCCAGG
AAATATTGAATCCGATTTGCAGTCTGGAGCAGTGGCTGGATTTAAGTTGCTCTGGATCCTTCTGTTGGCC
ACCCTTGTGGGGCTGCTGCTCCAGCGGCTTGCAGCTAGACTGGGAGTGGTTACTGGGCTGCATCTTGCTG
AAGTATGTCACCGTCAGTATCCCAAGGTCCCACGAGTCATCCTGTGGCTGATGGTGGAGTTGGCTATCAT
CGGCTCAGACATGCAAGAAGTCATTGGCTCAGCCATTGCTATCAATCTTCTGTCTGTAGGAAGAATTCCT
CTGTGGGGTGGCGTTCTCATCACCATTGCAGATACTTTTGTATTTCTCTTCTTGGACAAATATGGCTTGC
GGAAGCTAGAAGCATTTTTTGGCTTTCTCATCACTATTATGGCCCTCACATTTGGATATGAGTATGTTAC
AGTGAAACCCAGCCAGAGCCAGGTACTCAAGGGCATGTTCGTACCATCCTGTTCAGGCTGTCGCACTCCA
CAGATTGAACAGGCTGTGGGCATCGTGGGAGCTGTCATCATGCCACACAACATGTACCTGCATTCTGCCT
TAGTCAAGTCTAGACAGGTAAACCGGAACAATAAGCAGGAAGTTCGAGAAGCCAATAAGTACTTTTTCAT
TGAATCCTGCATTGCACTCTTTGTTTCCTTCATCATCAATGTCTTTGTTGTCTCAGTCTTTGCTGAAGCA
TTTTTTGGGAAAACCAACGAGCAGGTGGTTGAAGTCTGTACAAATACCAGCAGTCCTCATGCTGGCCTCT
TTCCTAAAGATAACTCGACACTGGCTGTGGACATCTACAAAGGGGGTGTTGTGCTGGGATGTTACTTTGG
GCCTGCTGCACTCTACATTTGGGCAGTGGGGATCCTGGCTGCAGGACAGAGCTCCACCATGACAGGAACC
TATTCTGGCCAGTTTGTCATGGAGGGATTCCTGAACCTAAAGTGGTCACGCTTTGCCCGAGTGGTTCTGA
CTCGCTCTATTGCCATCATCCCCACTCTGCTTGTTGCTGTCTTCCAAGATGTAGAGCATCTAACAGGGAT
GAATGACTTTCTGAATGTTCTACAGAGCTTACAGCTTCCCTTTGCTCTCATACCCATCCTCACATTTACG
AGCTTGCGGCCAGTAATGAGTGACTTTGCCAATGGACTAGGCTGGCGGATTGCAGGAGGAATCTTGGTCC
TTATCATCTGTTCCATCAATATGTACTTTGTAGTGGTTTATGTCCGGGACCTAGGGCATGTGGCATTATA
TGTGGTGGCTGCTGTGGTCAGCGTGGCTTATCTGGGCTTTGTGTTCTACTTGGGTTGGCAATGTTTGATT
GCACTGGGCATGTCCTTCCTGGACTGTGGGCATACGGTAAGCATCTCTAAAGGCCTGCTGACAGAAGAAG
CCACCCGTGGCTACGTTAAATAA

Translation (590 aa):
MRKKQLKTEAAPHCELKSYSKNSATQVSTMVLGPEQKMSDDSVSGDHGESASLGNINPAYSNPSLSQSPG
DSEEYFATYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLA
TLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRIP
LWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVTVKPSQSQVLKGMFVPSCSGCRTP
QIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEA
FFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGT
YSGQFVMEGFLNLKWSRFARVVLTRSIAIIPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFT
SLRPVMSDFANGLGWRIAGGILVLIICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLI
ALGMSFLDCGHTVSISKGLLTEEATRGYVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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