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Report for CCDS21216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21216.1 Public Mus musculus 7 Nup62 23 108 98 CCDS HistoryNCBI Gene:18226Re-query CCDS DB by CCDS ID:21216.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057195.16 ENSMUSP00000056785.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057195.16Link to Ensembl Protein Viewer:ENSMUSP00000056785.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000057195Re-query CCDS DB by Protein ID:ENSMUSP00000056785
Original member Current member EBI ENSMUST00000208626.1 ENSMUSP00000146695.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208626.1Link to Ensembl Protein Viewer:ENSMUSP00000146695.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208626Re-query CCDS DB by Protein ID:ENSMUSP00000146695
Original member Current member EBI ENSMUST00000207103.1 ENSMUSP00000147181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207103.1Link to Ensembl Protein Viewer:ENSMUSP00000147181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207103Re-query CCDS DB by Protein ID:ENSMUSP00000147181
Original member Current member NCBI NM_053074.2 NP_444304.1 Accepted alive Link to Nucleotide Sequence:NM_053074.2Link to Protein Sequence:NP_444304.1Re-query CCDS DB by Nucleotide ID:NM_053074Re-query CCDS DB by Protein ID:NP_444304Link to BLAST:NP_444304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444304.1 526 Q63850 526 100% 0 0

Chromosomal Locations for CCDS 21216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44828563 44830143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGAGTGGATTTAACTTTGGAGGCACCGGGGCTCCTGCTGGCGGCTTTACATTTGGGACCGCAAAGACTG
CGACCACCACACCTGCCACTGGCTTTTCCTTCTCTGCTTCTGGCACCGGCACCGGAGGGTTTAATTTTGG
GACTCCCTCCCAGCCAGCTGCGACCACCCCTTCCACCAGCCTCTTCTCACTCACCACACAGACCCCAACC
ACACAGACCCCAGGATTCAACTTTGGAACAACACCTGCTTCTGGAGGAACAGGCTTCTCCCTGGGGATCA
GCACCCCAAAGCTCAGCCTGAGTAACGCAGCTGCCACACCAGCCACGGCCAACACTGGCAGCTTTGGGCT
TGGCAGCAGCACCCTCACCAATGCCATCTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCCCCACTGGC
TTTGTCTTTGGCTCTTCTACCACCTCTGCTCCGTCCACCGGCTCCACTGGGTTCTCATTCACCAGTGGCA
GTGCATCCCAGCCTGGAGCCTCTGGCTTCAGCCTTGGCTCTGTGGGTAGCTCTGCCCAGCCCACAGCACT
GTCTGGCTCTCCCTTCACACCAGCCACTCTGGTGACTACTACAGCAGGAGCTACACAGCCAGCTGCTGCT
GCACCCACTGCTGCCACCACCAGTGCAGGGTCTACACTCTTTGCTTCCATAGCTGCTGCTCCTGCCTCAT
CCAGTGCTACAGGGCTCTCCCTCCCAGCTCCGGTGACAACTGCAGCAACTCCTAGTGCTGGGACTTTGGG
CTTCAGCCTCAAGGCCCCTGGAGCAGCTCCTGGTGCCTCCACCACCAGCACCACCACTACCACTACCACC
ACTACTACCACTGCTGCTGCCGCTGCCGCCTCTACCACAACCACTGGCTTTGCCTTAAGTCTGAAACCCC
TGGTGTCAGCTGGCCCCAGCAGTGTAGCAGCTACTGCTCTGCCTGCCTCCAGCACAGCAGCTGGGACTGC
CACAGGTCCAGCGATGACCTATGCACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGGAGCTGGAAGAT
CAGGAGCGGCACTTCCTGCAGCAGGCCACACAGGTCAATGCCTGGGACCGCACACTGATTGAGAATGGGG
AGAAGATCACCAGCCTGCACCGAGAGGTGGAAAAGGTGAAGCTGGATCAGAAGCGACTGGACCAGGAGCT
GGACTTTATCCTGTCGCAGCAGAAGGAGCTGGAAGACCTCCTGAGCCCATTGGAGGAGTCAGTGAAGGAG
CAAAGTGGCACCATATACCTTCAGCACGCTGATGAGGAGCGTGAGAAGACCTACAAGCTGGCTGAGAACA
TTGATGCTCAGCTCAAGCGCATGGCACAGGACCTCAAGGATATCATCGAGCACCTGAACATGGCTGGTGG
CCCTGCAGACACCAGTGACCCATTGCAACAGATCTGCAAGATCCTCAATGCACACATGGACTCTCTTCAG
TGGGTGGACCAGAGCTCTGCCCTGCTGCAGAGGAGGGTGGAGGAGGCTAGCCGTGTATGTGAGGGCCGGC
GCAAGGAACAGGAGCGCAGTCTGCGCATTGCCTTTGACTAG

Translation (526 aa):
MSGFNFGGTGAPAGGFTFGTAKTATTTPATGFSFSASGTGTGGFNFGTPSQPAATTPSTSLFSLTTQTPT
TQTPGFNFGTTPASGGTGFSLGISTPKLSLSNAAATPATANTGSFGLGSSTLTNAISSGSTSNQGTAPTG
FVFGSSTTSAPSTGSTGFSFTSGSASQPGASGFSLGSVGSSAQPTALSGSPFTPATLVTTTAGATQPAAA
APTAATTSAGSTLFASIAAAPASSSATGLSLPAPVTTAATPSAGTLGFSLKAPGAAPGASTTSTTTTTTT
TTTTAAAAAASTTTTGFALSLKPLVSAGPSSVAATALPASSTAAGTATGPAMTYAQLESLINKWSLELED
QERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKE
QSGTIYLQHADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLNMAGGPADTSDPLQQICKILNAHMDSLQ
WVDQSSALLQRRVEEASRVCEGRRKEQERSLRIAFD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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