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Report for CCDS56287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56287.1 Public Homo sapiens 3 MLF1 24 110 108 CCDS HistoryNCBI Gene:4291Re-query CCDS DB by CCDS ID:56287.1Re-query CCDS DB by GeneID:4291See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 56287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000478894.7 ENSP00000417777.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478894.7Link to Ensembl Protein Viewer:ENSP00000417777.4Re-query CCDS DB by Nucleotide ID:ENST00000478894Re-query CCDS DB by Protein ID:ENSP00000417777
Original member Current member EBI ENST00000477042.6 ENSP00000419637.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000477042.6Link to Ensembl Protein Viewer:ENSP00000419637.2Re-query CCDS DB by Nucleotide ID:ENST00000477042Re-query CCDS DB by Protein ID:ENSP00000419637
Original member Current member EBI ENST00000471745.5 ENSP00000420134.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000471745.5Link to Ensembl Protein Viewer:ENSP00000420134.1Re-query CCDS DB by Nucleotide ID:ENST00000471745Re-query CCDS DB by Protein ID:ENSP00000420134
Original member Current member NCBI NM_001195432.4 NP_001182361.2 Accepted alive Link to Nucleotide Sequence:NM_001195432.4Link to Protein Sequence:NP_001182361.2Re-query CCDS DB by Nucleotide ID:NM_001195432Re-query CCDS DB by Protein ID:NP_001182361Link to BLAST:NP_001182361.2
Original member Current member NCBI NM_001195434.2 NP_001182363.1 Accepted alive Link to Nucleotide Sequence:NM_001195434.2Link to Protein Sequence:NP_001182363.1Re-query CCDS DB by Nucleotide ID:NM_001195434Re-query CCDS DB by Protein ID:NP_001182363Link to BLAST:NP_001182363.1
Original member Current member NCBI NM_001369785.1 NP_001356714.1 Accepted alive Link to Nucleotide Sequence:NM_001369785.1Link to Protein Sequence:NP_001356714.1Re-query CCDS DB by Nucleotide ID:NM_001369785Re-query CCDS DB by Protein ID:NP_001356714Link to BLAST:NP_001356714.1
Original member Current member NCBI NM_001378846.1 NP_001365775.1 Accepted alive Link to Nucleotide Sequence:NM_001378846.1Link to Protein Sequence:NP_001365775.1Re-query CCDS DB by Nucleotide ID:NM_001378846Re-query CCDS DB by Protein ID:NP_001365775Link to BLAST:NP_001365775.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182361.2 258 P58340-4 258 100% 0 0
NP_001182363.1 258 P58340-4 258 100% 0 0
NP_001356714.1 258 P58340-4 258 100% 0 0
NP_001365775.1 258 P58340-4 258 100% 0 0

Chromosomal Locations for CCDS 56287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158592462 158592581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158593382 158593426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158596862 158596945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158598080 158598208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158600014 158600173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158602807 158602939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158605097 158605202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGCGACAGATGATAAGAAGTTTTTCTGAACCCTTTGGAAGAGACTTGCTCAGTATCTCTGATGGTAGAG
GGAGAGCTCATAATCGTAGAGGACATAATGATGGTGAAGATTCTTTGACTGCAACGAGTTGTTCTCTTGT
GCCTTTTGGCGATTTTGGTGGTATGCATACAGATGTCAGCTCTTTCCAGACAATGGACCAAATGGTGTCA
AATATGAGAAACTATATGCAGAAATTAGAAAGAAACTTCGGTCAACTTTCAGTGGATCCAAATGGACATT
CATTTTGTTCTTCCTCAGTTATGACTTATTCCAAAATAGGAGATGAACCGCCAAAGGTTTTTCAGGCCTC
AACTCAAACTCGTCGAGCTCCAGGAGGAATAAAGGAAACCAGGAAAGCAATGAGAGATTCTGACAGTGGA
CTAGAAAAAATGGCTATTGGTCATCATATCCATGACCGAGCTCATGTCATTAAAAAGTCAAAGAACAAGA
AGACTGGAGATGAAGAGGTCAACCAGGAGTTCATCAATATGAATGAAAGTGATGCTCATGCTTTTGATGA
GGAGTGGCAAAGTGAGGTTTTGAAGTACAAACCAGGACGACACAATCTAGGAAACACTAGAATGAGAAGT
GTTGGCCATGAGAATCCTGGCTCCCGAGAACTTAAAAGAAGGGAGAAACCTCAACAAAGTCCAGCCATTG
AACATGGAAGGAGATCAAATGTTTTGGGGGACAAACTCCACATCAAAGGCTCATCTGTGAAAAGCAACAA
AAAATAA

Translation (258 aa):
MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDGEDSLTATSCSLVPFGDFGGMHTDVSSFQTMDQMVS
NMRNYMQKLERNFGQLSVDPNGHSFCSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSG
LEKMAIGHHIHDRAHVIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRS
VGHENPGSRELKRREKPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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