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Report for CCDS23108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23108.1 Public Mus musculus 9 Slc37a4 23 108 98 CCDS HistoryNCBI Gene:14385Re-query CCDS DB by CCDS ID:23108.1Re-query CCDS DB by GeneID:14385See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165839.2 ENSMUSP00000129564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165839.2Link to Ensembl Protein Viewer:ENSMUSP00000129564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165839Re-query CCDS DB by Protein ID:ENSMUSP00000129564
Original member Current member EBI ENSMUST00000215420.1 ENSMUSP00000148956.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215420.1Link to Ensembl Protein Viewer:ENSMUSP00000148956.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215420Re-query CCDS DB by Protein ID:ENSMUSP00000148956
Original member Current member EBI ENSMUST00000213388.1 ENSMUSP00000150843.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213388.1Link to Ensembl Protein Viewer:ENSMUSP00000150843.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213388Re-query CCDS DB by Protein ID:ENSMUSP00000150843
Original member NCBI NM_001293630.1 NP_001280559.1 Updated not alive Link to Nucleotide Sequence:NM_001293630.1Link to Protein Sequence:NP_001280559.1Re-query CCDS DB by Nucleotide ID:NM_001293630Re-query CCDS DB by Protein ID:NP_001280559
Current member NCBI NM_001293630.2 NP_001280559.1 Accepted alive Link to Nucleotide Sequence:NM_001293630.2Link to Protein Sequence:NP_001280559.1Re-query CCDS DB by Nucleotide ID:NM_001293630Re-query CCDS DB by Protein ID:NP_001280559Link to BLAST:NP_001280559.1
Original member NCBI NM_001293631.1 NP_001280560.1 Updated not alive Link to Nucleotide Sequence:NM_001293631.1Link to Protein Sequence:NP_001280560.1Re-query CCDS DB by Nucleotide ID:NM_001293631Re-query CCDS DB by Protein ID:NP_001280560
Current member NCBI NM_001293631.2 NP_001280560.1 Accepted alive Link to Nucleotide Sequence:NM_001293631.2Link to Protein Sequence:NP_001280560.1Re-query CCDS DB by Nucleotide ID:NM_001293631Re-query CCDS DB by Protein ID:NP_001280560Link to BLAST:NP_001280560.1
Original member NCBI NM_008063.2 NP_032089.2 Updated not alive Link to Nucleotide Sequence:NM_008063.2Link to Protein Sequence:NP_032089.2Re-query CCDS DB by Nucleotide ID:NM_008063Re-query CCDS DB by Protein ID:NP_032089
Current member NCBI NM_008063.3 NP_032089.2 Accepted alive Link to Nucleotide Sequence:NM_008063.3Link to Protein Sequence:NP_032089.2Re-query CCDS DB by Nucleotide ID:NM_008063Re-query CCDS DB by Protein ID:NP_032089Link to BLAST:NP_032089.2

Chromosomal Locations for CCDS 23108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44398474 44398621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44399249 44399481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44399795 44400038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44400489 44400647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44400847 44400932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44401421 44401534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44402073 44402211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44402302 44402468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCAGCCCAAGGCTACGGCTACTATCGCACTGTCATATTTGCGGCCATGTTTGGAGGCTACAGCCTGT
ACTATTTCAACCGCAAAACCTTCTCCTTTGTCATGCCCTCCTTGGTGGATGAGATCGCTCTGGACAAGGA
CGATTTGGGGCTCATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGCAAGTTTGTGAGCGGGGTTCTG
TCAGATCAGATGAGCGCCCGCTGGCTCTTCTCCTCTGGGCTGCTCCTGGTTGGTCTGGTCAACGTAGTCT
TCTCATGGAGCTCCACAGTGTCAGCCTTTGCTGCTCTTTGGTTTCTTAATGGTCTGGCACAGGGGCTGGG
CTGGCCCCCCTGTGGGAAGATCCTGAGGAAGTGGTTTGAGCCATCCCAGTTTGGCACTTGGTGGGCTGTG
TTGTCAACCAGCATGAACCTGGCTGGAAGTTTGGGACCTATCTTGGCAACGATCCTCGCCCAGAGCTACA
GCTGGCGCAGCACACTGGCCCTGTCTGGGGCACTGTGTGTGGTTGTCTCCTTCTTCTGTCTGCTGCTTAT
CCACAATGAACCTGCTGATGTTGGACTCCGAAATCTGGACCCTGCCCCCTCCAAGGGCAAAAAGGGCTCA
TCAAAGGAGGAGAGCACCCTACAGGATCTGCTGCTGTCCCCCTATCTCTGGGTGCTGTCCACTGGCTACC
TCGTGGTCTTCGGAGTAAAGACTTGCTGTACAGACTGGGGCCAGTTCTTCCTTATCCAGGAGCGAGGGCA
GTCCGCCCTTGTGGGTAGCTCCTACATCAGTGCCCTCGAGGTCGGAGGCCTTGTAGGAAGCATTGCAGCT
GGTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGCTGTCTCTGTATGGGAACCCTCGTCACGGCCTAT
TGCTACTCATGATGGCTGGGATGGCAGCATCCATGTTCCTCTTCCGAGTAACGGTGACCAGTGACTCACC
CAAGATCTGGATCCTGGTTTTAGGAGCCGTGTTTGGTTTCTCTTCTTATGGTCCCATTGCCTTGTTTGGA
GTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTCTCATGCTATTGTGGGACTTATGGCCA
ATGTGGGTGGATTTCTGGCTGGCTTACCCTTCAGCACCATTGCCAAGCACTATAGCTGGAGCACAGCCTT
CTGGGTGGCAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCTTCTTGCTTCGAAATATCCGCACCAAG
ATGGGCCGAGTATCCAAGAAGGGAGAGTGA

Translation (429 aa):
MAAQGYGYYRTVIFAAMFGGYSLYYFNRKTFSFVMPSLVDEIALDKDDLGLITSSQSAAYAISKFVSGVL
SDQMSARWLFSSGLLLVGLVNVVFSWSSTVSAFAALWFLNGLAQGLGWPPCGKILRKWFEPSQFGTWWAV
LSTSMNLAGSLGPILATILAQSYSWRSTLALSGALCVVVSFFCLLLIHNEPADVGLRNLDPAPSKGKKGS
SKEESTLQDLLLSPYLWVLSTGYLVVFGVKTCCTDWGQFFLIQERGQSALVGSSYISALEVGGLVGSIAA
GYLSDRAMAKAGLSLYGNPRHGLLLLMMAGMAASMFLFRVTVTSDSPKIWILVLGAVFGFSSYGPIALFG
VIANESAPPNLCGTSHAIVGLMANVGGFLAGLPFSTIAKHYSWSTAFWVAEVVCGASTVVFFLLRNIRTK
MGRVSKKGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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