CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS48244.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
48244.1 |
Public |
Mus musculus |
1 |
Npas2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:18143](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:48244.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 48244.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000056815.8 |
ENSMUSP00000054719.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000056815.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000054719.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000056815](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000054719](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_008719.2 |
NP_032745.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_008719.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_032745.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_008719](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_032745](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_032745.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_032745.2 |
816 |
P97460 |
816 |
99.8774% |
0 |
1 |
Chromosomal Locations for CCDS 48244.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2451 nt): ATGGACGAAGATGAGAAGGATAGAGCAAAGAGAGCCTCTCGAAATAAGTCTGAGAAGAAGCGTCGGGACC AGTTCAATGTTCTCATCAAAGAGCTCAGCTCCATGCTCCCTGGTAACACTCGGAAAATGGACAAAACCAC CGTGCTGGAGAAGGTCATCGGATTCTTGCAGAAACACAATGAAGTCTCAGCACAAACAGAAATCTGTGAC ATCCAGCAGGACTGGAAGCCATCATTCCTCAGTAACGAAGAATTCACCCAGCTGATGTTGGAGGCATTAG ATGGCTTCGTCATCGTCGTGACAACAGACGGCAGCATCATCTATGTGTCCGACAGTATCACACCTCTCCT TGGACATTTACCGGCGGATGTCATGGATCAGAACTTGTTAAATTTCCTTCCAGAGCAAGAACATTCCGAA GTTTATAAAATCCTTTCTTCCCATATGCTTGTGACGGATTCCCCCTCCCCAGAATTCCTAAAATCTGACA ACGATTTAGAGTTTTATTGCCATCTTCTCAGAGGCAGCTTGAACCCAAAGGAATTTCCAACTTACGAATA TATAAAATTTGTAGGAAATTTTCGCTCTTACAACAATGTGCCTAGCCCCTCCTGTAATGGCTTTGACAAC ACCCTTTCAAGACCCTGCCATGTACCCCTAGGAAAGGACGTCTGCTTCATCGCCACCGTGCGCCTGGCAA CCCCGCAGTTCTTAAAGGAAATGTGTGTAGCTGACGAACCTTTAGAGGAATTCACTTCGAGGCATAGCTT GGAATGGAAATTTTTATTTCTGGATCACAGAGCTCCTCCAATCATAGGATACCTGCCCTTTGAAGTACTT GGCACCTCAGGCTACGACTACTACCACATTGATGACCTGGAGCTCCTGGCCAGGTGCCACCAGCATCTGA TGCAGTTTGGCAAAGGGAAGTCGTGCTGTTACCGGTTTCTAACCAAAGGGCAGCAGTGGATTTGGTTGCA AACCCACTACTACATCACCTACCACCAATGGAACTCCAAGCCTGAGTTCATCGTATGCACACACTCAGTG GTCAGTTACGCAGATGTTCGAGTGGAAAGGAGACAGGAGCTGGCTCTGGAAGACCCACCCACAGAGGCCA TGCACCCCTCTGCAGTGAAGGAAAAGGACTCAAGCCTAGAGCCTCCACAGCCCTTTAATGCACTTGACAT GGGCGCCTCAGGTCTTCCCAGCAGCCCTTCTCCATCAGCCTCCTCAAGGAGTTCCCACAAGTCCTCACAC ACAGCCATGTCAGAACCCACCTCCACTCCAACCAAGCTGATGGCTGAGAACAGCACCACAGCTTTGCCAA GACCGGCCACCCTACCCCAGGAGTTACCAGTGCAGGGGCTCAGCCAGGCAGCCACAATGCCGACTGCTCT GCATTCCTCAGCCTCCTGCGACCTCACAAAGCAACTCCTGCTGCAGAGCCTGCCTCAGACCGGCTTGCAG AGTCCACCTGCTCCAGTGACACAGTTTTCAGCACAATTCAGCATGTTCCAGACCATTAAAGACCAACTGG AGCAGAGGACACGGATCCTGCAGGCCAACATTCGGTGGCAGCAGGAAGAGCTTCATAAGATCCAGGAACA ACTCTGCCTGGTCCAGGACTCCAACGTCCAGATGTTTCTGCAGCAGCCAGCTGTGTCCCTGAGCTTCAGC AGTACGCAGCGACCAGCAGCTCAGCAGCAGCTGCAGCAAAGGCCCGCCGCACCGTCTCAGCCCCAGCTTG TGGTCAACACTCCACTGCAGGGGCAGATCACATCCACCCAAGTCACAAACCAGCACCTGCTCCGAGAATC GAATGTGATATCCGCCCAGGGTCCAAAGCCAATGAGAAGTTCCCAGCTGCTGCCTGCCAGCGGCCGTTCA CTGAGCAGCCTGCCATCCCAGTTTAGCAGTACAGCTTCCGTGCTCCCGCCTGGCCTGAGCCTCACCACGA TTGCTCCCACCCCTCAGGATGACAGCCAGTGCCAGCCCAGCCCTGACTTCGGCCATGATCGGCAGCTCAG GCTGTTGCTGAGCCAGCCCATCCAGCCTATGATGCCTGGGTCCTGCGATGCCAGGCAGCCCTCAGAAGTC AGCAGAACTGGACGGCAAGTCAAGTATGCACAGAGCCAAGTGATGTTTCCAAGTCCAGACTCACACCCTA CCAACAGCAGCGCATCCACCCCGGTCCTGCTCATGGGGCAGGCAGTACTCCATCCCAGCTTCCCTGCTTC CCGGCCATCGCCACTGCAGCCAGCACAGGCACAGCAGCAGCCACCACCCTATTTGCAGGCACCAACATCT CTGCACAGTGAGCAGCCGGACTCGCTCCTTCTCTCCACCTTCTCCCAGCAGCCGGGAACCCTGGGCTATG CAGCCACACAGTCTACACCTCCGCAACCCCCACGCCCCTCCCGCAGGGTCAGCCGGCTGTCAGAGTCCTA A
Translation (816 aa): MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICD IQQDWKPSFLSNEEFTQLMLEALDGFVIVVTTDGSIIYVSDSITPLLGHLPADVMDQNLLNFLPEQEHSE VYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDN TLSRPCHVPLGKDVCFIATVRLATPQFLKEMCVADEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVL GTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSV VSYADVRVERRQELALEDPPTEAMHPSAVKEKDSSLEPPQPFNALDMGASGLPSSPSPSASSRSSHKSSH TAMSEPTSTPTKLMAENSTTALPRPATLPQELPVQGLSQAATMPTALHSSASCDLTKQLLLQSLPQTGLQ SPPAPVTQFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFS STQRPAAQQQLQQRPAAPSQPQLVVNTPLQGQITSTQVTNQHLLRESNVISAQGPKPMRSSQLLPASGRS LSSLPSQFSSTASVLPPGLSLTTIAPTPQDDSQCQPSPDFGHDRQLRLLLSQPIQPMMPGSCDARQPSEV SRTGRQVKYAQSQVMFPSPDSHPTNSSASTPVLLMGQAVLHPSFPASRPSPLQPAQAQQQPPPYLQAPTS LHSEQPDSLLLSTFSQQPGTLGYAATQSTPPQPPRPSRRVSRLSES
|