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Report for CCDS1992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1992.1 Public Homo sapiens 2 CD8A 24 110 108 CCDS HistoryNCBI Gene:925Re-query CCDS DB by CCDS ID:1992.1Re-query CCDS DB by GeneID:925See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 1992.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283635.8 ENSP00000283635.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283635.8Link to Ensembl Protein Viewer:ENSP00000283635.3Re-query CCDS DB by Nucleotide ID:ENST00000283635Re-query CCDS DB by Protein ID:ENSP00000283635
Original member Current member EBI ENST00000409511.6 ENSP00000386559.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409511.6Link to Ensembl Protein Viewer:ENSP00000386559.2Re-query CCDS DB by Nucleotide ID:ENST00000409511Re-query CCDS DB by Protein ID:ENSP00000386559
Original member Current member NCBI NM_001145873.1 NP_001139345.1 Accepted alive Link to Nucleotide Sequence:NM_001145873.1Link to Protein Sequence:NP_001139345.1Re-query CCDS DB by Nucleotide ID:NM_001145873Re-query CCDS DB by Protein ID:NP_001139345Link to BLAST:NP_001139345.1
Original member Current member NCBI NM_001382698.1 NP_001369627.1 Accepted alive Link to Nucleotide Sequence:NM_001382698.1Link to Protein Sequence:NP_001369627.1Re-query CCDS DB by Nucleotide ID:NM_001382698Re-query CCDS DB by Protein ID:NP_001369627Link to BLAST:NP_001369627.1
Original member Current member NCBI NM_001768.7 NP_001759.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001768.7Link to Protein Sequence:NP_001759.3Re-query CCDS DB by Nucleotide ID:NM_001768Re-query CCDS DB by Protein ID:NP_001759Link to BLAST:NP_001759.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139345.1 235 P01732-1 235 100% 0 0
NP_001369627.1 235 P01732-1 235 100% 0 0
NP_001759.3 235 P01732-1 235 100% 0 0

Chromosomal Locations for CCDS 1992.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86785920 86785971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86788530 86788560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86789323 86789433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86789640 86789750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86790328 86790681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86790777 86790825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGCCTTACCAGTGACCGCCTTGCTCCTGCCGCTGGCCTTGCTGCTCCACGCCGCCAGGCCGAGCCAGT
TCCGGGTGTCGCCGCTGGATCGGACCTGGAACCTGGGCGAGACAGTGGAGCTGAAGTGCCAGGTGCTGCT
GTCCAACCCGACGTCGGGCTGCTCGTGGCTCTTCCAGCCGCGCGGCGCCGCCGCCAGTCCCACCTTCCTC
CTATACCTCTCCCAAAACAAGCCCAAGGCGGCCGAGGGGCTGGACACCCAGCGGTTCTCGGGCAAGAGGT
TGGGGGACACCTTCGTCCTCACCCTGAGCGACTTCCGCCGAGAGAACGAGGGCTACTATTTCTGCTCGGC
CCTGAGCAACTCCATCATGTACTTCAGCCACTTCGTGCCGGTCTTCCTGCCAGCGAAGCCCACCACGACG
CCAGCGCCGCGACCACCAACACCGGCGCCCACCATCGCGTCGCAGCCCCTGTCCCTGCGCCCAGAGGCGT
GCCGGCCAGCGGCGGGGGGCGCAGTGCACACGAGGGGGCTGGACTTCGCCTGTGATATCTACATCTGGGC
GCCCTTGGCCGGGACTTGTGGGGTCCTTCTCCTGTCACTGGTTATCACCCTTTACTGCAACCACAGGAAC
CGAAGACGTGTTTGCAAATGTCCCCGGCCTGTGGTCAAATCGGGAGACAAGCCCAGCCTTTCGGCGAGAT
ACGTCTAA

Translation (235 aa):
MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFL
LYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLPAKPTTT
PAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIYIWAPLAGTCGVLLLSLVITLYCNHRN
RRRVCKCPRPVVKSGDKPSLSARYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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