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Report for CCDS41351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41351.1 Public Homo sapiens 1 NEXN 24 110 108 CCDS HistoryNCBI Gene:91624Re-query CCDS DB by CCDS ID:41351.1Re-query CCDS DB by GeneID:91624See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41351.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334785.12 ENSP00000333938.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334785.12Link to Ensembl Protein Viewer:ENSP00000333938.7Re-query CCDS DB by Nucleotide ID:ENST00000334785Re-query CCDS DB by Protein ID:ENSP00000333938
Original member Current member NCBI NM_144573.4 NP_653174.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144573.4Link to Protein Sequence:NP_653174.3Re-query CCDS DB by Nucleotide ID:NM_144573Re-query CCDS DB by Protein ID:NP_653174Link to BLAST:NP_653174.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653174.3 675 Q0ZGT2-1 675 100% 0 0

Chromosomal Locations for CCDS 41351.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 77916107 77916133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77917566 77917757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77917960 77918038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77918125 77918273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77925188 77925229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77926414 77926611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77926716 77926892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77929316 77929504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77933282 77933479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77935823 77936044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77942023 77942208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77942461 77942829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGAATGATATTTCCCAAAAGGCTGAGATTCTGCTTTCTTCATCTAAACCTGTCCCAAAAACCTATGTAC
CAAAACTTGGCAAGGGTGATGTAAAGGATAAGTTTGAAGCCATGCAGAGAGCCAGGGAAGAAAGAAATCA
AAGGAGATCTAGAGACGAAAAACAAAGAAGAAAAGAACAATATATTAGAGAGAGAGAATGGAACAGGAGA
AAGCAGGAGATTAAAGAAATGCTTGCTTCTGATGATGAGGAAGATGTATCTTCTAAAGTAGAAAAGGCTT
ATGTTCCAAAATTAACAGGAACTGTGAAGGGTAGATTTGCTGAAATGGAGAAACAAAGACAAGAGGAACA
AAGGAAGAGAACGGAGGAGGAACGAAAACGCAGAATTGAGCAGGATATGTTAGAAAAGAGGAAAATACAG
CGTGAATTAGCAAAAAGGGCTGAACAGATTGAGGACATAAACAATACGGGAACTGAATCAGCATCAGAGG
AAGGAGATGATTCACTACTTATAACTGTGGTACCTGTCAAATCATATAAAACATCTGGAAAAATGAAAAA
GAATTTTGAGGATCTAGAAAAAGAACGTGAAGAGAAAGAAAGGATCAAGTACGAGGAAGATAAAAGAATA
AGATATGAAGAACAACGACCATCTCTCAAGGAAGCAAAGTGTCTTTCATTAGTTATGGATGATGAAATAG
AAAGTGAAGCAAAAAAAGAATCACTTTCTCCCGGAAAATTGAAACTAACTTTTGAAGAACTGGAGCGACA
AAGACAAGAAAACCGAAAGAAGCAAGCTGAAGAGGAAGCAAGAAAACGTTTAGAAGAAGAGAAGCGTGCT
TTTGAAGAAGCAAGGCGGCAAATGGTAAATGAAGATGAGGAAAACCAAGACACAGCAAAAATTTTTAAAG
GGTACCGCCCTGGTAAACTCAAACTCAGTTTTGAAGAAATGGAAAGGCAAAGAAGAGAAGATGAAAAAAG
GAAAGCAGAAGAAGAAGCCAGAAGGAGAATAGAGGAAGAAAAGAAGGCGTTTGCTGAAGCAAGGAGAAAT
ATGGTAGTAGATGATGACTCCCCAGAGATGTATAAGACAATCTCTCAAGAATTTCTTACACCGGGAAAAC
TGGAAATTAATTTTGAAGAATTATTAAAACAAAAAATGGAAGAAGAAAAACGACGAACAGAGGAGGAACG
GAAGCATAAGCTAGAAATGGAGAAACAAGAATTTGAACAACTGAGACAGGAAATGGGAGAGGAAGAGGAA
GAAAATGAAACCTTTGGATTGAGCAGAGAATATGAAGAACTGATCAAATTAAAAAGGAGTGGCTCTATTC
AAGCTAAAAACCTAAAAAGCAAGTTTGAAAAAATTGGACAGTTGTCTGAAAAAGAAATACAGAAAAAAAT
AGAAGAAGAGCGAGCAAGAAGGAGAGCAATTGACCTTGAAATTAAAGAGCGAGAAGCTGAAAATTTTCAT
GAGGAAGATGATGTTGATGTTAGGCCTGCAAGAAAAAGCGAGGCTCCATTTACTCACAAAGTGAATATGA
AAGCTAGATTTGAACAAATGGCTAAGGCAAGAGAAGAAGAAGAACAAAGAAGAATTGAAGAACAAAAGTT
ACTACGCATGCAGTTTGAACAAAGGGAAATTGATGCAGCACTACAAAAGAAAAGAGAAGAGGAGGAGGAG
GAAGAAGGTAGCATCATGAATGGCTCCACTGCTGAAGATGAAGAGCAAACCAGATCAGGAGCTCCATGGT
TCAAGAAGCCTCTTAAAAACACATCAGTTGTAGACAGTGAGCCAGTCAGATTTACGGTTAAAGTAACAGG
AGAACCCAAACCAGAAATTACATGGTGGTTTGAAGGAGAAATACTGCAGGATGGAGAAGACTATCAATAT
ATTGAAAGGGGAGAAACTTACTGCCTTTACTTACCAGAAACTTTCCCAGAAGATGGAGGAGAGTATATGT
GTAAAGCAGTCAACAATAAAGGATCTGCAGCTAGTACCTGTATTCTTACCATTGAAAGTAAGAATTAA

Translation (675 aa):
MNDISQKAEILLSSSKPVPKTYVPKLGKGDVKDKFEAMQRAREERNQRRSRDEKQRRKEQYIREREWNRR
KQEIKEMLASDDEEDVSSKVEKAYVPKLTGTVKGRFAEMEKQRQEEQRKRTEEERKRRIEQDMLEKRKIQ
RELAKRAEQIEDINNTGTESASEEGDDSLLITVVPVKSYKTSGKMKKNFEDLEKEREEKERIKYEEDKRI
RYEEQRPSLKEAKCLSLVMDDEIESEAKKESLSPGKLKLTFEELERQRQENRKKQAEEEARKRLEEEKRA
FEEARRQMVNEDEENQDTAKIFKGYRPGKLKLSFEEMERQRREDEKRKAEEEARRRIEEEKKAFAEARRN
MVVDDDSPEMYKTISQEFLTPGKLEINFEELLKQKMEEEKRRTEEERKHKLEMEKQEFEQLRQEMGEEEE
ENETFGLSREYEELIKLKRSGSIQAKNLKSKFEKIGQLSEKEIQKKIEEERARRRAIDLEIKEREAENFH
EEDDVDVRPARKSEAPFTHKVNMKARFEQMAKAREEEEQRRIEEQKLLRMQFEQREIDAALQKKREEEEE
EEGSIMNGSTAEDEEQTRSGAPWFKKPLKNTSVVDSEPVRFTVKVTGEPKPEITWWFEGEILQDGEDYQY
IERGETYCLYLPETFPEDGGEYMCKAVNNKGSAASTCILTIESKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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