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Report for CCDS41805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41805.1 Public Homo sapiens 12 TMBIM4 24 110 108 CCDS HistoryNCBI Gene:51643Re-query CCDS DB by CCDS ID:41805.1Re-query CCDS DB by GeneID:51643See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41805.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358230.8 ENSP00000350965.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358230.8Link to Ensembl Protein Viewer:ENSP00000350965.3Re-query CCDS DB by Nucleotide ID:ENST00000358230Re-query CCDS DB by Protein ID:ENSP00000350965
Original member Current member NCBI NM_016056.4 NP_057140.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016056.4Link to Protein Sequence:NP_057140.2Re-query CCDS DB by Nucleotide ID:NM_016056Re-query CCDS DB by Protein ID:NP_057140Link to BLAST:NP_057140.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057140.2 238 Q9HC24 238 100% 0 0

Chromosomal Locations for CCDS 41805.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 66137960 66138166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66138724 66138769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66145841 66145958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66147908 66147941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66152271 66152376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66153340 66153448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 66169855 66169951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCTGACCCCGACCCCCGGTACCCTCGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCAGCGTGG
CCTCCGCCACCGTGCACATCCGAATGGCCTTTCTGAGAAAAGTCTACAGCATTCTTTCTCTGCAGGTTCT
CTTAACTACAGTGACTTCAACAGTTTTTTTATACTTTGAGTCTGTACGGACATTTGTACATGAGAGTCCT
GCCTTAATTTTGCTGTTTGCCCTCGGATCTCTGGGTTTGATTTTTGCGTTGATTTTAAACAGACATAAGT
ATCCCCTTAACCTGTACCTACTTTTTGGATTTACGCTGTTGGAAGCTCTGACTGTGGCAGTTGTTGTTAC
TTTCTATGATGTATATATTATTCTGCAAGCTTTCATACTGACTACTACAGTATTTTTTGGTTTGACTGTG
TATACTCTACAATCTAAGAAGGATTTCAGCAAATTTGGAGCAGGGCTGTTTGCTCTTTTGTGGATATTGT
GCCTGTCAGGATTCTTGAAGTTTTTTTTTTATAGTGAGATAATGGAGTTGGTCTTAGCCGCTGCAGGAGC
CCTTCTTTTCTGTGGATTCATCATCTATGACACACACTCACTGATGCATAAACTGTCACCTGAAGAGTAC
GTATTAGCTGCCATCAGCCTCTACTTGGATATCATCAATCTATTCCTGCACCTGTTACGGTTTCTGGAAG
CAGTTAATAAAAAGTAA

Translation (238 aa):
MADPDPRYPRSSIEDDFNYGSSVASATVHIRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESP
ALILLFALGSLGLIFALILNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTV
YTLQSKKDFSKFGAGLFALLWILCLSGFLKFFFYSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEY
VLAAISLYLDIINLFLHLLRFLEAVNKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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