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Report for CCDS13912.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13912.1 Public Homo sapiens 22 LARGE1 24 110 108 CCDS HistoryNCBI Gene:9215Re-query CCDS DB by CCDS ID:13912.1Re-query CCDS DB by GeneID:9215See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13912.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354992.7 ENSP00000347088.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354992.7Link to Ensembl Protein Viewer:ENSP00000347088.2Re-query CCDS DB by Nucleotide ID:ENST00000354992Re-query CCDS DB by Protein ID:ENSP00000347088
Original member Current member EBI ENST00000397394.8 ENSP00000380549.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397394.8Link to Ensembl Protein Viewer:ENSP00000380549.2Re-query CCDS DB by Nucleotide ID:ENST00000397394Re-query CCDS DB by Protein ID:ENSP00000380549
Original member Current member EBI ENST00000413114.6 ENSP00000415546.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413114.6Link to Ensembl Protein Viewer:ENSP00000415546.2Re-query CCDS DB by Nucleotide ID:ENST00000413114Re-query CCDS DB by Protein ID:ENSP00000415546
Original member Current member EBI ENST00000676132.1 ENSP00000501854.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676132.1Link to Ensembl Protein Viewer:ENSP00000501854.1Re-query CCDS DB by Nucleotide ID:ENST00000676132Re-query CCDS DB by Protein ID:ENSP00000501854
Original member Current member EBI ENST00000676070.1 ENSP00000502152.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676070.1Link to Ensembl Protein Viewer:ENSP00000502152.1Re-query CCDS DB by Nucleotide ID:ENST00000676070Re-query CCDS DB by Protein ID:ENSP00000502152
Original member Current member EBI ENST00000676370.1 ENSP00000502238.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676370.1Link to Ensembl Protein Viewer:ENSP00000502238.1Re-query CCDS DB by Nucleotide ID:ENST00000676370Re-query CCDS DB by Protein ID:ENSP00000502238
Original member Current member EBI ENST00000675416.1 ENSP00000502826.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675416.1Link to Ensembl Protein Viewer:ENSP00000502826.1Re-query CCDS DB by Nucleotide ID:ENST00000675416Re-query CCDS DB by Protein ID:ENSP00000502826
Original member Current member NCBI NM_001362949.2 NP_001349878.1 Accepted alive Link to Nucleotide Sequence:NM_001362949.2Link to Protein Sequence:NP_001349878.1Re-query CCDS DB by Nucleotide ID:NM_001362949Re-query CCDS DB by Protein ID:NP_001349878Link to BLAST:NP_001349878.1
Original member Current member NCBI NM_001362951.2 NP_001349880.1 Accepted alive Link to Nucleotide Sequence:NM_001362951.2Link to Protein Sequence:NP_001349880.1Re-query CCDS DB by Nucleotide ID:NM_001362951Re-query CCDS DB by Protein ID:NP_001349880Link to BLAST:NP_001349880.1
Original member Current member NCBI NM_001362953.2 NP_001349882.1 Accepted alive Link to Nucleotide Sequence:NM_001362953.2Link to Protein Sequence:NP_001349882.1Re-query CCDS DB by Nucleotide ID:NM_001362953Re-query CCDS DB by Protein ID:NP_001349882Link to BLAST:NP_001349882.1
Original member Current member NCBI NM_001378624.1 NP_001365553.1 Accepted alive Link to Nucleotide Sequence:NM_001378624.1Link to Protein Sequence:NP_001365553.1Re-query CCDS DB by Nucleotide ID:NM_001378624Re-query CCDS DB by Protein ID:NP_001365553Link to BLAST:NP_001365553.1
Original member Current member NCBI NM_001378625.1 NP_001365554.1 Accepted alive Link to Nucleotide Sequence:NM_001378625.1Link to Protein Sequence:NP_001365554.1Re-query CCDS DB by Nucleotide ID:NM_001378625Re-query CCDS DB by Protein ID:NP_001365554Link to BLAST:NP_001365554.1
Original member Current member NCBI NM_001378626.1 NP_001365555.1 Accepted alive Link to Nucleotide Sequence:NM_001378626.1Link to Protein Sequence:NP_001365555.1Re-query CCDS DB by Nucleotide ID:NM_001378626Re-query CCDS DB by Protein ID:NP_001365555Link to BLAST:NP_001365555.1
Original member Current member NCBI NM_004737.7 NP_004728.1 Accepted alive Link to Nucleotide Sequence:NM_004737.7Link to Protein Sequence:NP_004728.1Re-query CCDS DB by Nucleotide ID:NM_004737Re-query CCDS DB by Protein ID:NP_004728Link to BLAST:NP_004728.1
Original member Current member NCBI NM_133642.5 NP_598397.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133642.5Link to Protein Sequence:NP_598397.1Re-query CCDS DB by Nucleotide ID:NM_133642Re-query CCDS DB by Protein ID:NP_598397Link to BLAST:NP_598397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349878.1 756 O95461-1 756 100% 0 0
NP_001349880.1 756 O95461-1 756 100% 0 0
NP_001349882.1 756 O95461-1 756 100% 0 0
NP_001365553.1 756 O95461-1 756 100% 0 0
NP_001365554.1 756 O95461-1 756 100% 0 0
NP_001365555.1 756 O95461-1 756 100% 0 0
NP_004728.1 756 O95461-1 756 100% 0 0
NP_598397.1 756 O95461-1 756 100% 0 0

Chromosomal Locations for CCDS 13912.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 33274427 33274624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33277060 33277255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33283202 33283348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33304229 33304507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33316085 33316248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33337646 33337801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33381919 33382044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33384192 33384304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33432161 33432265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33564848 33565019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33604435 33604558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33626244 33626326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33650367 33650668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 33761371 33761476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGCTGGGAATCTGCAGGGGGAGACGGAAATTCTTGGCTGCCTCGTTGAGTCTTCTCTGCATCCCAGCCA
TCACCTGGATTTACCTGTTTTCTGGGAGCTTCGAAGATGGAAAGCCCGTGTCTCTGTCACCGCTGGAGTC
CCAGGCACACAGCCCCAGGTACACGGCCTCCAGCCAGCGGGAGCGCGAGAGCCTGGAGGTGCGCATGCGC
GAGGTGGAGGAGGAGAACCGCGCCCTCCGCAGGCAGCTCAGCCTGGCCCAGGGCCGAGCCCCATCCCATC
GCCGAGGCAACCACTCCAAGACCTACTCCATGGAGGAGGGCACTGGAGACAGCGAGAACCTTCGGGCTGG
CATCGTGGCAGGCAACAGCTCCGAGTGTGGGCAGCAGCCGGTCGTGGAGAAATGCGAGACAATCCACGTT
GCTATTGTCTGCGCCGGATACAATGCCAGCCGGGATGTCGTCACCCTGGTCAAATCCGTCCTGTTCCATA
GACGGAACCCTCTGCACTTCCACCTTATTGCTGACTCCATTGCGGAGCAGATCCTGGCCACGCTCTTCCA
GACCTGGATGGTGCCCGCTGTGCGTGTGGACTTCTACAATGCAGACGAGCTCAAGTCTGAAGTTTCCTGG
ATCCCCAATAAACATTACTCTGGGATTTATGGTCTGATGAAGCTTGTCCTGACCAAGACTCTTCCTGCCA
ACCTGGAGAGAGTCATCGTCCTTGACACGGATATCACCTTTGCCACTGACATTGCAGAGCTGTGGGCTGT
GTTCCACAAGTTCAAAGGTCAGCAAGTCCTGGGCTTGGTGGAGAACCAGAGTGACTGGTACCTTGGAAAC
CTGTGGAAAAATCACCGCCCATGGCCAGCCCTTGGAAGAGGCTACAACACAGGGGTGATCCTGTTACTTC
TGGATAAGCTGCGGAAGATGAAATGGGAGCAGATGTGGAGGCTGACCGCAGAGAGGGAGCTCATGGGCAT
GCTCTCTACATCCTTAGCTGACCAGGATATTTTCAATGCCGTCATCAAACAAAACCCCTTCCTTGTGTAC
CAGCTCCCCTGCTTCTGGAATGTGCAGCTGTCAGACCACACCCGCTCCGAGCAGTGCTACAGAGACGTGT
CTGATCTAAAGGTCATTCACTGGAACTCCCCCAAGAAGCTCCGGGTGAAGAACAAGCATGTGGAGTTTTT
TCGCAACCTCTACCTGACCTTCCTGGAGTATGACGGCAATCTTCTGAGGCGGGAACTGTTTGGCTGCCCC
AGTGAGGCTGATGTCAACAGTGAAAACCTCCAGAAGCAGCTGTCTGAGCTGGACGAGGACGACCTGTGCT
ATGAGTTCCGGCGAGAGCGCTTCACTGTCCACCGCACCCACCTGTACTTCCTGCACTACGAGTATGAGCC
TGCAGCAGACAGCACGGACGTCACCCTGGTCGCTCAGCTGTCCATGGACAGGCTCCAGATGCTGGAGGCC
ATCTGCAAGCACTGGGAGGGGCCCATCAGCCTGGCCCTCTACCTGTCAGACGCCGAGGCCCAGCAGTTCC
TCCGCTACGCACAGGGCTCTGAGGTGCTTATGAGCCGCCACAACGTGGGCTACCACATCGTGTACAAGGA
GGGCCAGTTCTACCCCGTGAACCTGCTGCGCAACGTGGCCATGAAGCACATCAGCACTCCCTACATGTTC
CTGTCTGACATTGACTTCCTGCCCATGTATGGGCTCTATGAGTACCTCAGGAAGTCTGTCATCCAGCTCG
ATCTTGCCAACACCAAGAAAGCAATGATTGTCCCCGCGTTCGAGACACTGCGCTACCGGCTGTCCTTCCC
CAAGTCAAAAGCGGAGTTGCTGTCAATGCTGGACATGGGGACCCTCTTCACATTCAGGTACCACGTCTGG
ACGAAAGGCCACGCACCCACAAACTTCGCCAAGTGGCGGACCGCCACCACGCCTTACCGGGTTGAGTGGG
AGGCCGATTTTGAGCCGTATGTTGTTGTGAGACGTGACTGCCCGGAGTACGACCGGAGGTTTGTAGGCTT
TGGCTGGAACAAAGTGGCTCATATCATGGAGCTGGATGTGCAGGAGTATGAGTTCATTGTGCTGCCCAAC
GCCTACATGATCCACATGCCTCATGCCCCCAGCTTCGACATTACCAAGTTCCGTTCCAACAAGCAATACC
GCATCTGTCTCAAAACCCTCAAGGAAGAGTTTCAGCAGGACATGTCCCGCCGCTACGGCTTTGCTGCCCT
GAAATATCTCACAGCCGAGAACAACAGCTAG

Translation (756 aa):
MLGICRGRRKFLAASLSLLCIPAITWIYLFSGSFEDGKPVSLSPLESQAHSPRYTASSQRERESLEVRMR
EVEEENRALRRQLSLAQGRAPSHRRGNHSKTYSMEEGTGDSENLRAGIVAGNSSECGQQPVVEKCETIHV
AIVCAGYNASRDVVTLVKSVLFHRRNPLHFHLIADSIAEQILATLFQTWMVPAVRVDFYNADELKSEVSW
IPNKHYSGIYGLMKLVLTKTLPANLERVIVLDTDITFATDIAELWAVFHKFKGQQVLGLVENQSDWYLGN
LWKNHRPWPALGRGYNTGVILLLLDKLRKMKWEQMWRLTAERELMGMLSTSLADQDIFNAVIKQNPFLVY
QLPCFWNVQLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELFGCP
SEADVNSENLQKQLSELDEDDLCYEFRRERFTVHRTHLYFLHYEYEPAADSTDVTLVAQLSMDRLQMLEA
ICKHWEGPISLALYLSDAEAQQFLRYAQGSEVLMSRHNVGYHIVYKEGQFYPVNLLRNVAMKHISTPYMF
LSDIDFLPMYGLYEYLRKSVIQLDLANTKKAMIVPAFETLRYRLSFPKSKAELLSMLDMGTLFTFRYHVW
TKGHAPTNFAKWRTATTPYRVEWEADFEPYVVVRRDCPEYDRRFVGFGWNKVAHIMELDVQEYEFIVLPN
AYMIHMPHAPSFDITKFRSNKQYRICLKTLKEEFQQDMSRRYGFAALKYLTAENNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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