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Report for CCDS91965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91965.1 Public Homo sapiens 15 SNRPN 24 110 108 CCDS HistoryNCBI Gene:6638Re-query CCDS DB by CCDS ID:91965.1Re-query CCDS DB by GeneID:6638See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91965.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000554227.6 ENSP00000452342.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554227.6Link to Ensembl Protein Viewer:ENSP00000452342.2Re-query CCDS DB by Nucleotide ID:ENST00000554227Re-query CCDS DB by Protein ID:ENSP00000452342
Original member Current member NCBI NM_001378251.1 NP_001365180.1 Accepted alive Link to Nucleotide Sequence:NM_001378251.1Link to Protein Sequence:NP_001365180.1Re-query CCDS DB by Nucleotide ID:NM_001378251Re-query CCDS DB by Protein ID:NP_001365180Link to BLAST:NP_001365180.1
Original member Current member NCBI NM_001378252.1 NP_001365181.1 Accepted alive Link to Nucleotide Sequence:NM_001378252.1Link to Protein Sequence:NP_001365181.1Re-query CCDS DB by Nucleotide ID:NM_001378252Re-query CCDS DB by Protein ID:NP_001365181Link to BLAST:NP_001365181.1
Original member Current member NCBI NM_001378253.1 NP_001365182.1 Accepted alive Link to Nucleotide Sequence:NM_001378253.1Link to Protein Sequence:NP_001365182.1Re-query CCDS DB by Nucleotide ID:NM_001378253Re-query CCDS DB by Protein ID:NP_001365182Link to BLAST:NP_001365182.1
Original member Current member NCBI NM_001378254.1 NP_001365183.1 Accepted alive Link to Nucleotide Sequence:NM_001378254.1Link to Protein Sequence:NP_001365183.1Re-query CCDS DB by Nucleotide ID:NM_001378254Re-query CCDS DB by Protein ID:NP_001365183Link to BLAST:NP_001365183.1
Original member Current member NCBI NM_001378255.1 NP_001365184.1 Accepted alive Link to Nucleotide Sequence:NM_001378255.1Link to Protein Sequence:NP_001365184.1Re-query CCDS DB by Nucleotide ID:NM_001378255Re-query CCDS DB by Protein ID:NP_001365184Link to BLAST:NP_001365184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365180.1 244 P63162-2 244 100% 0 0
NP_001365181.1 244 P63162-2 244 100% 0 0
NP_001365182.1 244 P63162-2 244 100% 0 0
NP_001365183.1 244 P63162-2 244 100% 0 0
NP_001365184.1 244 P63162-2 244 100% 0 0

Chromosomal Locations for CCDS 91965.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 24974943 24974957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 24975358 24975509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 24976305 24976416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 24976877 24977029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 24977778 24977916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 24978193 24978318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 24978407 24978444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGATGGACTCTCAGACTGTTGGCAAGAGTAGCAAGATGCTGCAGCACATTGACTATAGAATGAGATGTA
TCCTGCAAGATGGCCGAATCTTCATTGGCACCTTTAAGGCTTTTGACAAGCATATGAATTTGATCCTCTG
TGATTGTGATGAGTTCAGAAAGATCAAGCCAAAGAATGCGAAGCAACCAGAGCGTGAAGAAAAGCGGGTT
TTGGGTCTGGTGTTGCTGCGTGGGGAGAACTTGGTATCCATGACTGTGGAGGGGCCACCCCCCAAAGATA
CTGGCATTGCTCGGGTACCACTTGCTGGAGCTGCTGGAGGCCCTGGGGTTGGTAGGGCAGCTGGTAGAGG
AGTACCAGCTGGTGTGCCAATTCCCCAGGCCCCTGCTGGATTGGCAGGCCCTGTCCGAGGAGTTGGGGGA
CCATCCCAGCAGGTAATGACTCCACAGGGAAGAGGCACTGTAGCAGCTGCTGCTGTTGCTGCGACTGCCA
GTATTGCTGGAGCCCCAACACAGTACCCACCAGGACGGGGCACTCCGCCCCCACCCGTCGGCAGAGCAAC
CCCACCTCCAGGCATTATGGCTCCTCCACCTGGTATGAGACCACCCATGGGCCCACCAATTGGGCTTCCC
CCTGCTCGAGGGACGCCAATAGGCATGCCGCCTCCGGGAATGAGACCCCCTCCACCAGGCATTAGAGGTC
CACCTCCCCCAGGAATGCGTCCACCAAGACCTTAG

Translation (244 aa):
MMDSQTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV
LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGG
PSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLP
PARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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