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Report for CCDS9197.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9197.1 Public Homo sapiens 12 COX6A1 24 110 108 CCDS HistoryNCBI Gene:1337Re-query CCDS DB by CCDS ID:9197.1Re-query CCDS DB by GeneID:1337See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9197.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229379.3 ENSP00000229379.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229379.3Link to Ensembl Protein Viewer:ENSP00000229379.2Re-query CCDS DB by Nucleotide ID:ENST00000229379Re-query CCDS DB by Protein ID:ENSP00000229379
Original member Current member NCBI NM_004373.4 NP_004364.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004373.4Link to Protein Sequence:NP_004364.2Re-query CCDS DB by Nucleotide ID:NM_004373Re-query CCDS DB by Protein ID:NP_004364Link to BLAST:NP_004364.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004364.2 109 P12074 109 100% 0 0

Chromosomal Locations for CCDS 9197.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 120438127 120438229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120438379 120438521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 120440454 120440537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGCGGTAGTTGGTGTGTCCTCGGTTTCTCGGCTGCTGGGTCGGTCCCGCCCACAGCTGGGGCGGCCTA
TGTCGAGTGGCGCCCATGGCGAAGAGGGCTCAGCTCGCATGTGGAAGACTCTCACCTTCTTCGTCGCGCT
CCCCGGGGTGGCAGTCAGCATGCTGAATGTGTACCTGAAGTCGCACCACGGAGAGCACGAGAGACCCGAG
TTCATCGCCTACCCCCATCTCCGCATCAGGACCAAGCCGTTTCCCTGGGGAGATGGTAACCATACTCTAT
TCCATAACCCTCATGTGAATCCACTTCCAACTGGCTACGAAGATGAATAA

Translation (109 aa):
MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPE
FIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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