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Report for CCDS47357.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47357.2 Public Homo sapiens 5 ZFP62 24 110 108 CCDS HistoryNCBI Gene:643836Re-query CCDS DB by CCDS ID:47357.2Re-query CCDS DB by GeneID:643836See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 47357.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data, and by the reference genome allele (GRCh37 assembly). It should be noted that the updated start codon is polymorphic, where some transcripts contain ATC versus ATG in the reference genome allele. This corresponds to the reference SNP rs705441. The previously represented downstream start codon is likely to be used in transcripts derived from the ATC allele, resulting in a protein that is 27 aa shorter at the N-terminus.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47357.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512132.5 ENSP00000426193.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512132.5Link to Ensembl Protein Viewer:ENSP00000426193.1Re-query CCDS DB by Nucleotide ID:ENST00000512132Re-query CCDS DB by Protein ID:ENSP00000426193
Original member Current member NCBI NM_001377939.1 NP_001364868.1 Accepted alive Link to Nucleotide Sequence:NM_001377939.1Link to Protein Sequence:NP_001364868.1Re-query CCDS DB by Nucleotide ID:NM_001377939Re-query CCDS DB by Protein ID:NP_001364868Link to BLAST:NP_001364868.1
Original member Current member NCBI NM_001377940.1 NP_001364869.1 Accepted alive Link to Nucleotide Sequence:NM_001377940.1Link to Protein Sequence:NP_001364869.1Re-query CCDS DB by Nucleotide ID:NM_001377940Re-query CCDS DB by Protein ID:NP_001364869Link to BLAST:NP_001364869.1
Original member Current member NCBI NM_001377941.1 NP_001364870.1 Accepted alive Link to Nucleotide Sequence:NM_001377941.1Link to Protein Sequence:NP_001364870.1Re-query CCDS DB by Nucleotide ID:NM_001377941Re-query CCDS DB by Protein ID:NP_001364870Link to BLAST:NP_001364870.1
Original member Current member NCBI NM_001377942.1 NP_001364871.1 Accepted alive Link to Nucleotide Sequence:NM_001377942.1Link to Protein Sequence:NP_001364871.1Re-query CCDS DB by Nucleotide ID:NM_001377942Re-query CCDS DB by Protein ID:NP_001364871Link to BLAST:NP_001364871.1
Original member Current member NCBI NM_152283.5 NP_689496.4 Accepted alive Link to Nucleotide Sequence:NM_152283.5Link to Protein Sequence:NP_689496.4Re-query CCDS DB by Nucleotide ID:NM_152283Re-query CCDS DB by Protein ID:NP_689496Link to BLAST:NP_689496.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364868.1 867 Q8NB50-3 867 100% 0 0
NP_001364869.1 867 Q8NB50-3 867 100% 0 0
NP_001364870.1 867 Q8NB50-3 867 100% 0 0
NP_001364871.1 867 Q8NB50-3 867 100% 0 0
NP_689496.4 867 Q8NB50-3 867 100% 0 0

Chromosomal Locations for CCDS 47357.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 180848792 180851395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAATCAACAGAAAAAGCCTG
TGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCAATCAGCAAAGCCAAGAGTACAGCAAA
TATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCTTGCATCTGAGCCCACAGCATATCACACAC
CAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAAACGTGTGGAGAACATTAATGGAACCTCCT
ACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTT
CAAATATAATTCCCGCCTTGTTCAACATAAAATTATGCACACTGGGGAAAAGCGCTATGAATGTGATGAC
TGTGGAGGGACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCACAAACGGATCCACACTGGGGAGAAGCCGT
ACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCCAGCCTTATAAACCACAAAAGCACCCATTC
TGGGGAGAAGAACTGTAAATGTGATGAATGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCAT
AAAAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGTGAGTGTGGGAAGGCCTTCAGGAACAGCTCTG
GGCTCAGAGTCCACAAAAGGATCCACACGGGGGAGAAGCCCTATGAATGCGACATCTGTGGGAAAACCTT
CAGTAACAGCTCTGGCCTTAGGGTCCATAAAAGGATCCACACAGGTGAGAAACCTTACGAATGTGATGAG
TGTGGGAAGGCCTTCATTACTTGTAGAACACTTCTCAACCATAAAAGCATCCACTTTGGAGATAAACCCT
ATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCTCTTCTCATTCAGCATAAAGTCATCCACAC
TGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTTTCAGGAACAGCTCAGGCCTCATAGTGCAT
AAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAG
GCCTCGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCCCATGAATGTAAGGAGTGTGGGAAATCCTT
TAGTTATAACTCACTACTTCTTCAACACAGAACTATTCATACCGGAGAGAGACCTTATGTATGTGATGTG
TGTGGGAAAACGTTCAGAAACAATGCAGGCCTCAAAGTCCACAGGAGGCTCCATACTGGGGAAAAACCAT
ATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAAGGAATCCACCT
TGGGGAGAAGCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTACAGCTCTGCCCTTGAACAGCAT
AAAAGGATTCATACCAGGGAAAAACCCTTTGGGTGTGATGAGTGTGGTAAAGCTTTCAGAAATAATTCTG
GCCTTAAAGTACATAAACGAATCCACACTGGGGAACGACCTTACAAATGTGAAGAATGTGGGAAAGCATA
CATCTCTCTCTCGAGCCTTATAAATCATAAAAGTGTACACCCTGGGGAGAAGCCCTTTAAGTGTGACGAG
TGTGAGAAGGCCTTCATCACATACCGAACCCTTACAAACCACAAAAAAGTTCATCTTGGGGAGAAGCCCT
ACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCGCTCCTTTCTCAGCACAGAAGGGTCCACAC
TAGAGAGAAACCCTATGAATGTGACAGGTGTGAGAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCAT
AAAAGAATCCATACTGGGGAGAGGCCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAA
GCCTTATTAACCATAAGAGTACCCACCCTGGCAGGACACCCCATACATGTGATGAATGTGGAAAAGCTTT
TTTCTCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATCTTGGGGAGAAACCCTTCAAGTGTGTTGAG
TGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTCTCAGCACAAGAGGATCCACACAGGGGAGAAACCCT
ATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGCCTCACAGTGCATAAAAGGATCCACAC
AGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAGGCATACATCTCACACTCAAGTCTTATCAATCAT
AAAAGTGTCCACCAGGGGAAGCAGCCCTATAATTGTGAGTGTGGGAAATCCTTCAATTATAGATCAGTCC
TTGACCAGCACAAAAGGATCCACACTGGAAAGAAGCCATACCGATGTAATGAGTGTGGTAAGGCTTTTAA
TATCAGATCAAATCTCACCAAGCATAAAAGAACCCATACTGGAGAGGAATCTTTAAATGTGATATATGTG
GGAAGTTATAGTGGCACATCCCAGAAGAGAACCTATGAGGGAGGGAATGCCCTGGATGGGGGCAGGATGA
GGATGCCTCTGTAG

Translation (867 aa):
MPESKVGDTCVWDSKVENQQKKPVENRMKEDKSSIREAISKAKSTANIKTEQEGEASEKSLHLSPQHITH
QTMPIGQRGSEQGKRVENINGTSYPSLQQKTNAVKKLHKCDECGKSFKYNSRLVQHKIMHTGEKRYECDD
CGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYSSLINHKSTHSGEKNCKCDECGKSFNYSSVLDQH
KRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKPYECDICGKTFSNSSGLRVHKRIHTGEKPYECDE
CGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSSLLIQHKVIHTGEKPYECDECGKAFRNSSGLIVH
KRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKAHECKECGKSFSYNSLLLQHRTIHTGERPYVCDV
CGKTFRNNAGLKVHRRLHTGEKPYKCDVCGKAYISRSSLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQH
KRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERPYKCEECGKAYISLSSLINHKSVHPGEKPFKCDE
CEKAFITYRTLTNHKKVHLGEKPYKCDVCEKSFNYTSLLSQHRRVHTREKPYECDRCEKVFRNNSSLKVH
KRIHTGERPYECDVCGKAYISHSSLINHKSTHPGRTPHTCDECGKAFFSSRTLISHKRVHLGEKPFKCVE
CGKSFSYSSLLSQHKRIHTGEKPYVCDRCGKAFRNSSGLTVHKRIHTGEKPYECDECGKAYISHSSLINH
KSVHQGKQPYNCECGKSFNYRSVLDQHKRIHTGKKPYRCNECGKAFNIRSNLTKHKRTHTGEESLNVIYV
GSYSGTSQKRTYEGGNALDGGRMRMPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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