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Report for CCDS10935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10935.1 Public Homo sapiens 16 GAN 24 110 108 CCDS HistoryNCBI Gene:8139Re-query CCDS DB by CCDS ID:10935.1Re-query CCDS DB by GeneID:8139See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000648994.2 ENSP00000497351.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000648994.2Link to Ensembl Protein Viewer:ENSP00000497351.1Re-query CCDS DB by Nucleotide ID:ENST00000648994Re-query CCDS DB by Protein ID:ENSP00000497351
Original member Current member NCBI NM_022041.4 NP_071324.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022041.4Link to Protein Sequence:NP_071324.1Re-query CCDS DB by Nucleotide ID:NM_022041Re-query CCDS DB by Protein ID:NP_071324Link to BLAST:NP_071324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071324.1 597 Q9H2C0 597 100% 0 0

Chromosomal Locations for CCDS 10935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 81315114 81315280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81351583 81351697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81354405 81354755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81356785 81357002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81357810 81357931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81362499 81362611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81363794 81363943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81364974 81365110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81365350 81365478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81377219 81377328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81377415 81377596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGCTGAGGGCAGTGCCGTGTCTGACCCTCAGCACGCCGCGCGTCTGCTGCGAGCGCTCAGCTCTTTCC
GCGAGGAGTCTCGCTTCTGCGACGCGCACCTGGTCCTCGACGGGGAGGAGATCCCGGTGCAGAAGAACAT
CCTGGCGGCGGCCAGCCCGTACATCAGGACAAAGTTAAACTATAATCCTCCAAAAGATGATGGATCAACT
TATAAGATTGAACTTGAAGGGATATCGGTAATGGTTATGAGAGAGATCCTGGATTACATCTTCAGTGGGC
AGATCAGGCTAAATGAAGATACAATCCAAGATGTTGTTCAGGCAGCTGACCTGCTGCTACTGACGGACCT
TAAAACCCTGTGCTGTGAGTTTTTGGAAGGCTGCATTGCTGCTGAGAACTGTATTGGTATCCGTGACTTT
GCACTACATTACTGCCTCCATCACGTTCATTACCTTGCCACAGAATACCTGGAGACTCATTTCCGAGACG
TCAGCAGCACGGAAGAATTCTTAGAGCTGAGTCCTCAAAAGCTTAAAGAAGTGATTTCTCTTGAGAAGTT
AAACGTTGGCAATGAAAGATATGTCTTTGAAGCAGTAATTCGATGGATAGCACATGATACAGAAATAAGA
AAGGTCCACATGAAGGATGTTATGTCAGCTCTGTGGGTTTCAGGGTTGGACTCCAGTTATTTACGGGAAC
AGATGCTGAATGAACCATTAGTACGAGAAATTGTCAAAGAGTGTAGCAATATACCGCTCAGCCAGCCGCA
GCAAGGGGAGGCGATGCTGGCCAACTTCAAACCCCGGGGCTACTCTGAGTGCATCGTGACTGTTGGTGGA
GAAGAGAGAGTTTCACGGAAACCCACAGCAGCGATGCGATGCATGTGCCCTCTCTATGACCCTAACAGGC
AGCTTTGGATCGAACTGGCCCCTTTAAGCATGCCGAGAATTAACCATGGAGTTCTCTCAGCAGAAGGATT
TTTGTTTGTATTCGGGGGCCAAGATGAAAATAAGCAGACTCTTAGCTCAGGAGAAAAGTATGATCCAGAT
GCAAATACATGGACAGCATTGCCACCTATGAACGAGGCAAGACATAACTTCGGAATTGTGGAGATAGATG
GGATGCTGTACATTTTGGGAGGAGAGGATGGTGAAAAGGAGCTGATTTCCATGGAGTGTTACGATATTTA
TTCTAAAACCTGGACAAAGCAACCTGATTTGACCATGGTCAGAAAGATCGGCTGCTATGCAGCTATGAAA
AAGAAAATCTACGCCATGGGTGGAGGCTCCTACGGAAAGCTTTTTGAGTCTGTAGAGTGTTATGATCCCA
GGACCCAGCAGTGGACTGCCATATGTCCACTAAAAGAGAGGAGGTTTGGAGCGGTGGCCTGTGGAGTTGC
TATGGAGCTGTATGTGTTTGGGGGAGTCCGAAGTCGTGAGGACGCCCAGGGTAGCGAGATGGTAACTTGC
AAGTCCGAGTTCTACCATGATGAGTTTAAAAGGTGGATCTATCTTAACGACCAGAATTTATGCATCCCCG
CCAGTTCCTCTTTTGTTTATGGAGCTGTACCTATAGGAGCCAGTATTTATGTTATTGGAGATCTTGATAC
AGGTACCAATTACGACTACGTGCGTGAGTTTAAAAGAAGCACAGGAACCTGGCACCACACTAAACCACTC
CTTCCATCCGACCTTCGCCGTACAGGATGTGCAGCCTTACGCATTGCGAATTGCAAGCTTTTCCGCCTGC
AGCTTCAGCAAGGCTTATTCCGTATTCGTGTTCATTCCCCTTGA

Translation (597 aa):
MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGST
YKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDF
ALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIR
KVHMKDVMSALWVSGLDSSYLREQMLNEPLVREIVKECSNIPLSQPQQGEAMLANFKPRGYSECIVTVGG
EERVSRKPTAAMRCMCPLYDPNRQLWIELAPLSMPRINHGVLSAEGFLFVFGGQDENKQTLSSGEKYDPD
ANTWTALPPMNEARHNFGIVEIDGMLYILGGEDGEKELISMECYDIYSKTWTKQPDLTMVRKIGCYAAMK
KKIYAMGGGSYGKLFESVECYDPRTQQWTAICPLKERRFGAVACGVAMELYVFGGVRSREDAQGSEMVTC
KSEFYHDEFKRWIYLNDQNLCIPASSSFVYGAVPIGASIYVIGDLDTGTNYDYVREFKRSTGTWHHTKPL
LPSDLRRTGCAALRIANCKLFRLQLQQGLFRIRVHSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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