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Report for CCDS44824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44824.1 Public Homo sapiens 12 PEX5 24 110 108 CCDS HistoryNCBI Gene:5830Re-query CCDS DB by CCDS ID:44824.1Re-query CCDS DB by GeneID:5830See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 44824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266563.9 ENSP00000266563.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000266563.9Link to Ensembl Protein Viewer:ENSP00000266563.5Re-query CCDS DB by Nucleotide ID:ENST00000266563Re-query CCDS DB by Protein ID:ENSP00000266563
Original member Current member NCBI NM_001131024.2 NP_001124496.1 Accepted alive Link to Nucleotide Sequence:NM_001131024.2Link to Protein Sequence:NP_001124496.1Re-query CCDS DB by Nucleotide ID:NM_001131024Re-query CCDS DB by Protein ID:NP_001124496Link to BLAST:NP_001124496.1
Original member Current member NCBI NM_001351124.3 NP_001338053.1 Accepted alive Link to Nucleotide Sequence:NM_001351124.3Link to Protein Sequence:NP_001338053.1Re-query CCDS DB by Nucleotide ID:NM_001351124Re-query CCDS DB by Protein ID:NP_001338053Link to BLAST:NP_001338053.1
Original member Current member NCBI NM_001351126.2 NP_001338055.1 Accepted alive Link to Nucleotide Sequence:NM_001351126.2Link to Protein Sequence:NP_001338055.1Re-query CCDS DB by Nucleotide ID:NM_001351126Re-query CCDS DB by Protein ID:NP_001338055Link to BLAST:NP_001338055.1
Original member Current member NCBI NM_001351127.2 NP_001338056.1 Accepted alive Link to Nucleotide Sequence:NM_001351127.2Link to Protein Sequence:NP_001338056.1Re-query CCDS DB by Nucleotide ID:NM_001351127Re-query CCDS DB by Protein ID:NP_001338056Link to BLAST:NP_001338056.1
Original member Current member NCBI NM_001351128.2 NP_001338057.1 Accepted alive Link to Nucleotide Sequence:NM_001351128.2Link to Protein Sequence:NP_001338057.1Re-query CCDS DB by Nucleotide ID:NM_001351128Re-query CCDS DB by Protein ID:NP_001338057Link to BLAST:NP_001338057.1
Original member Current member NCBI NM_001351130.3 NP_001338059.1 Accepted alive Link to Nucleotide Sequence:NM_001351130.3Link to Protein Sequence:NP_001338059.1Re-query CCDS DB by Nucleotide ID:NM_001351130Re-query CCDS DB by Protein ID:NP_001338059Link to BLAST:NP_001338059.1
Original member Current member NCBI NM_001351137.3 NP_001338066.2 Accepted alive Link to Nucleotide Sequence:NM_001351137.3Link to Protein Sequence:NP_001338066.2Re-query CCDS DB by Nucleotide ID:NM_001351137Re-query CCDS DB by Protein ID:NP_001338066Link to BLAST:NP_001338066.2
Original member Current member NCBI NM_001374645.1 NP_001361574.1 Accepted alive Link to Nucleotide Sequence:NM_001374645.1Link to Protein Sequence:NP_001361574.1Re-query CCDS DB by Nucleotide ID:NM_001374645Re-query CCDS DB by Protein ID:NP_001361574Link to BLAST:NP_001361574.1
Original member Current member NCBI NM_001374646.1 NP_001361575.1 Accepted alive Link to Nucleotide Sequence:NM_001374646.1Link to Protein Sequence:NP_001361575.1Re-query CCDS DB by Nucleotide ID:NM_001374646Re-query CCDS DB by Protein ID:NP_001361575Link to BLAST:NP_001361575.1
Original member Current member NCBI NM_001374648.2 NP_001361577.1 Accepted alive Link to Nucleotide Sequence:NM_001374648.2Link to Protein Sequence:NP_001361577.1Re-query CCDS DB by Nucleotide ID:NM_001374648Re-query CCDS DB by Protein ID:NP_001361577Link to BLAST:NP_001361577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124496.1 602 P50542-2 602 100% 0 0
NP_001338053.1 602 P50542-2 602 100% 0 0
NP_001338055.1 602 P50542-2 602 100% 0 0
NP_001338056.1 602 P50542-2 602 100% 0 0
NP_001338057.1 602 P50542-2 602 100% 0 0
NP_001338059.1 602 P50542-2 602 100% 0 0
NP_001338066.2 602 P50542-2 602 100% 0 0
NP_001361574.1 602 P50542-2 602 100% 0 0
NP_001361575.1 602 P50542-2 602 100% 0 0
NP_001361577.1 602 P50542-2 602 100% 0 0

Chromosomal Locations for CCDS 44824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 7190378 7190524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7190888 7190923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7191226 7191358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7191569 7191700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7199011 7199113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7201751 7201841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7202612 7202704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7203432 7203551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7207659 7207802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7208010 7208080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7208457 7208669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7209005 7209170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7209683 7209840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7210022 7210223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGCAATGCGGGAGCTGGTGGAGGCCGAATGCGGGGGTGCCAACCCGCTCATGAAGCTCGCCGGGCACT
TCACCCAGGACAAGGCCCTTCGGCAGGAGGGATTGAGGCCTGGCCCCTGGCCCCCCGGAGCCCCGGCCTC
TGAGGCAGCCTCCAAGCCTTTGGGAGTAGCTTCTGAAGATGAGTTGGTGGCTGAATTCCTGCAGGACCAG
AATGCACCCCTTGTGTCCCGTGCCCCTCAGACCTTCAAGATGGATGACCTCCTGGCTGAGATGCAGCAGA
TTGAGCAGTCAAACTTCCGCCAGGCTCCCCAGAGAGCCCCTGGTGTGGCAGACTTGGCCTTGTCTGAGAA
CTGGGCCCAGGAGTTTCTTGCAGCTGGAGATGCTGTGGATGTAACTCAGGATTATAATGAGACTGACTGG
TCCCAAGAATTCATCTCTGAAGTTACAGACCCCTTGTCTGTGTCCCCTGCCCGCTGGGCTGAGGAATATT
TGGAGCAATCAGAGGAGAAGCTGTGGCTGGGAGAACCTGAGGGAACAGCCACCGATCGCTGGTATGATGA
ATATCATCCTGAGGAGGATCTGCAGCACACGGCCAGTGACTTTGTGGCCAAAGTGGATGACCCCAAATTG
GCTAATTCTGAGGGTACATCAGATGCCTGGGTTGACCAGTTCACAAGACCAGTAAACACATCTGCCCTTG
ATATGGAGTTTGAACGAGCCAAGTCAGCTATAGAGTCTGATGTCGATTTCTGGGACAAGTTGCAGGCAGA
GTTGGAGGAGATGGCAAAACGGGATGCTGAGGCCCACCCCTGGCTTTCTGACTATGATGACCTTACGTCA
GCTACCTATGATAAGGGGTACCAGTTTGAGGAGGAGAACCCCTTGCGTGATCACCCTCAGCCTTTTGAAG
AAGGGCTGCGGCGCCTTCAGGAGGGGGACCTGCCAAATGCTGTGCTGCTTTTTGAGGCAGCTGTGCAGCA
GGATCCTAAGCACATGGAAGCTTGGCAGTATCTGGGTACCACCCAGGCAGAGAATGAACAAGAACTATTA
GCCATCAGTGCATTGCGGAGGTGTCTGGAGCTAAAGCCAGATAACCAGACAGCACTGATGGCGCTGGCTG
TGAGCTTCACCAACGAGTCCCTGCAGCGACAGGCCTGTGAAACCCTACGAGACTGGCTGCGGTACACACC
AGCCTATGCCCATCTGGTGACACCTGCTGAAGAAGGGGCTGGTGGGGCAGGACTGGGCCCCAGCAAGCGT
ATCCTGGGATCTCTCTTGTCTGACTCCCTGTTTCTTGAAGTGAAAGAGCTCTTCCTGGCAGCTGTGCGGC
TGGACCCTACCTCCATTGACCCTGATGTGCAGTGTGGCTTGGGAGTCCTTTTCAACCTGAGTGGGGAGTA
TGACAAGGCCGTGGACTGCTTCACAGCTGCCCTCAGCGTTCGTCCCAATGACTATTTGCTGTGGAATAAG
CTAGGCGCCACCCTGGCCAATGGAAACCAGAGTGAAGAAGCAGTAGCTGCGTACCGCCGGGCCCTCGAGC
TCCAGCCTGGCTATATCCGGTCCCGCTATAACCTGGGCATCAGCTGCATCAACCTCGGGGCTCACCGGGA
GGCTGTGGAGCACTTTCTGGAGGCCCTGAACATGCAGAGGAAAAGCCGGGGCCCCCGGGGTGAAGGAGGT
GCCATGTCGGAGAACATCTGGAGCACCCTGCGTTTGGCATTGTCTATGTTAGGCCAGAGCGATGCCTATG
GGGCAGCCGACGCGCGGGATCTGTCCACCCTCCTAACTATGTTTGGCCTGCCCCAGTGA

Translation (602 aa):
MAMRELVEAECGGANPLMKLAGHFTQDKALRQEGLRPGPWPPGAPASEAASKPLGVASEDELVAEFLQDQ
NAPLVSRAPQTFKMDDLLAEMQQIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDAVDVTQDYNETDW
SQEFISEVTDPLSVSPARWAEEYLEQSEEKLWLGEPEGTATDRWYDEYHPEEDLQHTASDFVAKVDDPKL
ANSEGTSDAWVDQFTRPVNTSALDMEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTS
ATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL
AISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR
ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK
LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG
AMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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